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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTTACAAACAGGATAAATCTCACCCCAGTTGCTTTGATGGAGGGAGGGGCATTAGTAAAAACACTGTTTCAGGATAACCCAACAAAACCTGATTATAGgtattatatacataatgcattatgcatcatgctgaactaaagtttagttttaactttttattcgcattaagctggagtacagatgagtttcttaaacaaa...

Basic information

species Glycine max
transcript GLYMA10G03740.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G03740.2 (Glycine max), 5'ss of exon 6
lower sequence: AT3G54660.1 (Arabidopsis thaliana), 5'ss of exon 6
ATGTTACAAACAGGATAAATCTCACCCCAGTTGCTTTGATGGAGGGAGGGGCATTAGTAAAAACACTGTTTCAGGATAACCCAACAAAACCTGATTATAGgtattatatacat---aatgcattatgcatcatgctgaactaaagtttagttttaact-----ttttattcgcattaagctggagtacag-atgagtttctta-aacaaa-------------------------------------------------------
|||||||  || | || ||| | || ||||||||||||||||||||||| ||||| |  |||||  |||||||  || | |||||||| ||||||||||||||  |||   ||   ||    | |||  | |  ||     |   ||| ||  |   |     ||||  ||   |||  ||    | | | || |||    || ||||                                                         
ATGTTACTGACCGAATCAATTTGACTCCAGTTGCTTTGATGGAGGGAGGTGCATTGGCTAAAACTTTGTTTCAAAATGAGCCAACAAAGCCTGATTATAGgtaacataacaatcttaacttttgatgtttaaacctttgggattttttggtgattgatgagagtttttctctgtttagtcttacatgctgcatcagtgatctataacattttataactgttgtctctgatggcttttatcctttctgtgttctataatcaactag

upper sequence: GLYMA10G03740.2 (Glycine max), 5'ss of exon 6
lower sequence: Vv07s0141g00390.t01 (Vitis vinifera), 5'ss of exon 6
ATGTTACAAACAGGATAAATCTCACCCCAGTTGCTTTGATGGAGGGAGGGGCATTAGTAAAAACACTGTTTCAGGATAACCCAACAAAACCTGATTATAGgtattatatacataatgcattatgcatcatgctgaactaa--agtttagttttaactttttattcgcattaagctggagtacagatgagtttcttaaacaaa
|||| ||| | || |||||| | || ||||||||||||||||||||||| |||||||  ||||| || |||  | || | ||||||||||| |||||||||| || |||  ||  ||    |       || |    |     |  | | |     ||   |   ||      || || ||||  | | | |  |   |   
ATGTAACAGATAGAATAAATTTGACTCCAGTTGCTTTGATGGAGGGAGGAGCATTAGCTAAAACTCTATTTGGGAATGAACCAACAAAACCAGATTATAGgtgttctatctattttgtgcaaaattgtttggtagcattgttggcgtggataaggattcagagatgctcctgtctaga-tacatttaactattgtctgctc-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192299302|gb|FG988702.1|FG988702
EST:     GCATTAGTAAAAACACTGTTTCAGGATAACCCAACAAAACCTGATTATAG                         AGCTGTTCCTTCTGCTGTATTTTCTCAACCACCAATTGGACAAGTTGGTCT
genomic: GCATTAGTAAAAACACTGTTTCAGGATAACCCAACAAAACCTGATTATAGgtattatata ... cattatctagAGCTGTTCCTTCTGCTGTATTTTCTCAACCACCAATTGGACAAGTTGGTCT
EST: gi|15286301|gb|BI470192.1|BI470192
EST:     GTAAAAACACTGTTTCAGGATAACCCAACAAAACCTGATTATAG                         AGCTGTTCCTTCTGCTGTATTTTCTCAACCACCAATTGGACAAGTTGGTCT
genomic: GTAAAAACACTGTTTCAGGATAACCCAACAAAACCTGATTATAGgtattatata ... cattatctagAGCTGTTCCTTCTGCTGTATTTTCTCAACCACCAATTGGACAAGTTGGTCT
EST: gi|11273725|gb|BF324101.1|BF324101
EST:     GCATTAGTAAAAACACTGTTTCAGGATAACCCAACAAAACCTGATTATAG                         AGCTGTTCCTTCTGCTGTATTTTCTCAACCACCAATTGGACAAGTTGGTCT
genomic: GCATTAGTAAAAACACTGTTTCAGGATAACCCAACAAAACCTGATTATAGgtattatata ... cattatctagAGCTGTTCCTTCTGCTGTATTTTCTCAACCACCAATTGGACAAGTTGGTCT
EST: gi|19347352|gb|BM892232.1|BM892232
EST:     GCATTAGTAAAAACACTGTTTCAGGATAACCCAACAAAACCTGATTATAG                         AGCTGTTCCTTCTGCTGTATTTTCTCAACCACCAATTGGACAAGTTGGTCT
genomic: GCATTAGTAAAAACACTGTTTCAGGATAACCCAACAAAACCTGATTATAGgtattatata ... cattatctagAGCTGTTCCTTCTGCTGTATTTTCTCAACCACCAATTGGACAAGTTGGTCT
EST: gi|16347393|gb|BI972988.1|BI972988
EST:     GTTTCAGGATAACCCAACAAAACCTGATTATAG                         AGCTGTTCCTTCTGCTGTATTTTCTCAACCACCAATTGGACAAGTTGGTCT
genomic: GTTTCAGGATAACCCAACAAAACCTGATTATAGgtattatata ... cattatctagAGCTGTTCCTTCTGCTGTATTTTCTCAACCACCAATTGGACAAGTTGGTCT