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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAAGGGTACAATCCCTCCATGACTACAAGGGTCATGCGGACAATTTCGTCTGTTCTCTAATTCCTGGAACCTCTTTTTCTTCCACTCAATATACCCCAGgtgaagtcccttttccttcttaattcttttacttatcctctctcccagtggaaactgcgcgtgtgtgtggtccagtttttgtaacggttacttgcttgttactag

Basic information

species Glycine max
transcript GLYMA10G02130.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51336243|gb|CO980109.1|CO980109
EST:     CACTCAATATACCCCAG                         GTGGGCTTCTTTTCAAGATGAGTGATAGCAACATGCAGTATGTCACATCCA
genomic: CACTCAATATACCCCAGgtgaagtccc ... ttgttactagGTGGGCTTCTTTTCAAGATGAGTGATAGCAACATGCAGTATGTCACATCCA
EST: gi|8402468|gb|BE058102.1|BE058102
EST:     GGAACCTCTTTTTCTTCCACTCAATATACCCCAG                         GTGGGCTTCTTTTCAAGATGAGTGATAGCAACATGCAGTATGTCACATCCA
genomic: GGAACCTCTTTTTCTTCCACTCAATATACCCCAGgtgaagtccc ... ttgttactagGTGGGCTTCTTTTCAAGATGAGTGATAGCAACATGCAGTATGTCACATCCA
EST: gi|9439791|gb|BE440305.1|BE440305
EST:     CTGTTCTCTAATTCCTGGAACCTCTTTTTCTTCCACTCAATATACCCCAG                         GTGGGCTTCTTTTCAAGATGAGTGATAGCAACATGCAGTATGTCACATCCA
genomic: CTGTTCTCTAATTCCTGGAACCTCTTTTTCTTCCACTCAATATACCCCAGgtgaagtccc ... ttgttactagGTGGGCTTCTTTTCAAGATGAGTGATAGCAACATGCAGTATGTCACATCCA
EST: gi|26058641|gb|CA801555.1|CA801555
EST:     CTGTTCTCTAATTCCTGGAACCTCTTTTTCTTCCACTCAATATACCCCAG                         GTGGGCTTCTTTTCAAGATGAGTGATAGCAACATGCAGTATGTCACATCCA
genomic: CTGTTCTCTAATTCCTGGAACCTCTTTTTCTTCCACTCAATATACCCCAGgtgaagtccc ... ttgttactagGTGGGCTTCTTTTCAAGATGAGTGATAGCAACATGCAGTATGTCACATCCA