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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACGTCCGGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGTACTGGTAAAAGAAAGAgtaagtaactgagtactatatttcatcttccttggttattcatagatttatctgtccaatgttaattattgacttcaatttttaaacttatggtaagtga...

Basic information

species Glycine max
transcript GLYMA10G00490.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192333081|gb|FK026410.1|FK026410
EST:     AGATGAAATGTTCAAAGTGGTCCGTACTGGTAAAAGAAAGA                         CCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGGTT
genomic: AGATGAAATGTTCAAAGTGGTCCGTACTGGTAAAAGAAAGAgtaagtaact ... catttttcagCCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGGTT
EST: gi|26059399|gb|CA802313.1|CA802313
EST:     GGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGTACTGGTAAAAGAAAGA                         CCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTG
genomic: GGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGTACTGGTAAAAGAAAGAgtaagtaact ... catttttcagCCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTG
EST: gi|17400258|gb|BM177032.1|BM177032
EST:     GGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGTACTGGTAAAAGAAAGA                         CCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGGTT
genomic: GGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGTACTGGTAAAAGAAAGAgtaagtaact ... catttttcagCCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGGTT
EST: gi|15813104|gb|BI785379.1|BI785379
EST:     GGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGTACTGGTAAAAGAAAGA                         CCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGGTT
genomic: GGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGTACTGGTAAAAGAAAGAgtaagtaact ... catttttcagCCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGGTT
EST: gi|298179957|gb|HO025172.1|HO025172
EST:     GGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGTACTGGTAAAAGAAAGA                         CCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGGT
genomic: GGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGTACTGGTAAAAGAAAGAgtaagtaact ... catttttcagCCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGGT
EST: gi|5606189|gb|AI900287.1|AI900287
EST:     GGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGTACTGGTAAAAGAAAGA                         CCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGT
genomic: GGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGTACTGGTAAAAGAAAGAgtaagtaact ... catttttcagCCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGT
EST: gi|26043857|gb|CA782197.1|CA782197
EST:     GGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGTACTGGTAAAAGAAAGA                         CCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGGTT
genomic: GGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGTACTGGTAAAAGAAAGAgtaagtaact ... catttttcagCCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGGTT
EST: gi|298178157|gb|HO027540.1|HO027540
EST:     GGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGTACTGGTAAAAGAAAGA                         CCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGGTT
genomic: GGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGTACTGGTAAAAGAAAGAgtaagtaact ... catttttcagCCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGGTT
EST: gi|209725840|gb|BW654703.1|BW654703
EST:     GGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGTACTGGTAAAAGAAAGA                         CCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGGTT
genomic: GGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGTACTGGTAAAAGAAAGAgtaagtaact ... catttttcagCCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGGTT
EST: gi|120530814|gb|EH258947.1|EH258947
EST:     GGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGTACTGGTAAAAGAAAGA                         CCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGGTT
genomic: GGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGTACTGGTAAAAGAAAGAgtaagtaact ... catttttcagCCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGGTT
EST: gi|298182139|gb|HO026314.1|HO026314
EST:     GGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGTACTGGTAAAAGAAAGA                         CCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTG
genomic: GGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGTACTGGTAAAAGAAAGAgtaagtaact ... catttttcagCCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTG
EST: gi|22932705|gb|BU549844.1|BU549844
EST:     TGAAGATGAAATGTTCAAAGTGGTCNGTACTGGTAAAAGAAAGA                         CCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGGTT
genomic: TGAAGATGAAATGTTCAAAGTGGTCCGTACTGGTAAAAGAAAGAgtaagtaact ... catttttcagCCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGGTT
EST: gi|298189817|gb|HO038220.1|HO038220
EST:     GGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGTACTGGTAAAAGAAAGA                         CCAAGCAATGGAAGAGGATGG
genomic: GGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGTACTGGTAAAAGAAAGAgtaagtaact ... catttttcagCCAAGCAATGGAAGAGGATGG
EST: gi|209725841|gb|BW654704.1|BW654704
EST:     GGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGTACTGGTAAAAGAAAGA                         CCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGGTT
genomic: GGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGTACTGGTAAAAGAAAGAgtaagtaact ... catttttcagCCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGGTT
EST: gi|192329667|gb|FK022933.1|FK022933
EST:     GGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGTACTGGTAAAAGAAAGA                         CCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGGTT
genomic: GGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGTACTGGTAAAAGAAAGAgtaagtaact ... catttttcagCCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGGTT
EST: gi|192333080|gb|FK026409.1|FK026409
EST:     GGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGTACTGGTAAAAGAAAGA                         CCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGGTT
genomic: GGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGTACTGGTAAAAGAAAGAgtaagtaact ... catttttcagCCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGGTT
EST: gi|120530581|gb|EH258714.1|EH258714
EST:     GGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGTACTGGTAAAAGAAAGA                         CCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGGTT
genomic: GGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGTACTGGTAAAAGAAAGAgtaagtaact ... catttttcagCCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGGTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTACGTCCGGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGTACTGGTAAAAGAAAGAgtaagtaactgagtactatatttcatcttccttggttattcatagatttatctgtccaatgttaattattgacttcaatttttaaacttatggtaagtga

- - - - - -  CTGAAG
- - - - - - - TGAAGA
- - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - -  AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA