1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GCCTGCAACAGTGAAGAAGATGGTTTATTTGGTTTTGATTTGCATAGTGATGGCAGTGGTCAAAGgtttgtgcttctcatatcattcaaaagagtttttctcttcttcctgtaagctatgtaattaagaaccaactcttacttcatgtag
species | Glycine max |
transcript | GLYMA09G41380.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GAAGATGGTTTATTTGGTTTTGATTTGCATAGTGATGGCAGTGGTCAAAG GCACTTGAATGCTTCCATTAAAGAAAACGAGTCAAATAATGCATTGGATTCEST: gi|192330256|gb|FK020556.1|FK020556
genomic: GAAGATGGTTTATTTGGTTTTGATTTGCATAGTGATGGCAGTGGTCAAAGgtttgtgctt ... cttcatgtagGCACTTGAATGCTTCCATTAAAGAAAACGAGTCAAATAATGCATTGGATTC
EST: A-GATGGTTTATTTGGGTTTTGATT-GCATAGTGATGGCAGTGGTCAAAG -CACTTGA-TGCTTCCATTAAAGAAAAEST: gi|7028643|gb|AW458426.1|AW458426
genomic: AAGATGGTTTATTTGG-TTTTGATTTGCATAGTGATGGCAGTGGTCAAAGgtttgtgctt ... cttcatgtagGCACTTGAATGCTTCCATTAAAGAAAA
EST: GAAGATGGTTTATTTGGTTTTGATTTGCATAGTGATGGCAGTGGTCAAAG GCACTTGAATGCTTCCATTAAAGAAAACGAGTCAAATAATGCATTGGATTCEST: gi|11690173|gb|BF597849.1|BF597849
genomic: GAAGATGGTTTATTTGGTTTTGATTTGCATAGTGATGGCAGTGGTCAAAGgtttgtgctt ... cttcatgtagGCACTTGAATGCTTCCATTAAAGAAAACGAGTCAAATAATGCATTGGATTC
EST: GATGGTTTATTTGGTTTTGATTTGCATAGTGATGGCAGTGGTCAAAG GCACTTGAATGCTTCCATTAAAGAAAACGAGTCAAATAATGCATTGGATTCEST: gi|51337090|gb|CO980956.1|CO980956
genomic: GATGGTTTATTTGGTTTTGATTTGCATAGTGATGGCAGTGGTCAAAGgtttgtgctt ... cttcatgtagGCACTTGAATGCTTCCATTAAAGAAAACGAGTCAAATAATGCATTGGATTC
EST: GAAGATGGTTTATTTGGTTTTGATTTGCATAGTGATGGCAGTGGTCAAAG GCACTTGAATGCTTCCATTAAAGAAAACGAGTCAAATAATGCATTGGATTC
genomic: GAAGATGGTTTATTTGGTTTTGATTTGCATAGTGATGGCAGTGGTCAAAGgtttgtgctt ... cttcatgtagGCACTTGAATGCTTCCATTAAAGAAAACGAGTCAAATAATGCATTGGATTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCTGCAACAGTGAAGAAGATGGTTTATTTGGTTTTGATTTGCATAGTGATGGCAGTGGTCAAAGgtttgtgcttctcatatcattcaaaagagtttttctcttcttcctgtaagctatgtaattaagaaccaactcttacttcatgtag
- - - - - - - - AAGATG