Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTTTAAGATTCAGAACATTGTTGGCTCTTGTGATGTCAAGTTCCCCATTCGACTTGAGGGTCTTGCCTATTCCCATGGTGCTTTCTCAAGTgtaagtgtgaagtgcaataatcatctgtttttcctggtgaatttcatggaaaaatggtcctcacaaattcctgccctagtaatcagtcctacatatggtc...

Basic information

species Glycine max
transcript GLYMA09G41330.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G41330.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os03g45410.1 (Oryza sativa), 5'ss of exon 7
GATTTTAAGATTCAGAACATTGTTGGCTCTTGTGATGTCAAGTTCCCCATTCGACTTGAGGGTCTTGCCTATTCCCATGGTGCTTTCTCAAGTgtaagtgtgaagtgcaataatcatctgtttttcctggtgaatttcatgga-aaaatggtcctcacaaattcc-tgccctagtaatcagtcctacatatggtc
||||| |||||||||||||||||||||||||||||||| || || || ||  | || ||||| ||||| ||||| |||||||||||||||||||||||| |||        |  |      ||||   |  |  |||||        ||| |  ||  |  | |  |||| |     | |               
GATTTCAAGATTCAGAACATTGTTGGCTCTTGTGATGTTAAATTTCCAATCAGGCTGGAGGGACTTGCATATTCTCATGGTGCTTTCTCAAGTgtaagt-tgagtccttgcatgc-----ctttttaggacgcctttcacatttgttatgttgttcttatgtcctgtgccttttgtgttaacag-----------

upper sequence: GLYMA09G41330.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os12g39070.1 (Oryza sativa), 5'ss of exon 6
GATTTTAAGATTCAGAACATTGTTGGCTCTTGTGATGTCAAGTTCCCCATTCGACTTGAGGGTCTTGCCTATTCCCATGGTGCTTTCTCAAGTgtaagtgtgaagtgcaataatcatctgtttttcctggtgaatttcatggaaaaatggtcctcacaaattcctgcccta-gtaatcagtcctacatatggtc
|| || |||||||||||||||||||| ||||||||||| || || || ||  | || ||||| ||||| ||||| |||||||||||||||||||||||| ||||      |  |    |||||||   ||   ||||| |  | | ||| |   |  |   || || | |  |   |  ||| | ||       
GACTTCAAGATTCAGAACATTGTTGGTTCTTGTGATGTTAAATTTCCAATCAGGCTGGAGGGACTTGCATATTCTCATGGTGCTTTCTCAAGTgtaagt-tgaa------tccttgcatgtttttttagg-atatttctttcacatatgttatgc-tattctcatgtcttgtgccttttgtcttccag------

upper sequence: GLYMA09G41330.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os10g29660.2 (Oryza sativa), 5'ss of exon 4
GATTTTAAGATTCAGAACATTGTTGGCTCTTGTGATGTCAAGTTCCCCATTCGACTTGAGGGTCTTGCCTATTCCCATGGTGCTTTCTCAAGTgtaagtgtgaagtgcaataatcatctgtttttcctggtgaatttcatggaaaaatggtcctcacaaattcctgc--cctagta---atcagtcctacatatggtc----------------------------------------------------
||||| ||||| |||||||||||||| || ||||||||||| || || ||||| || ||||| ||||| ||||| ||||| || ||||| ||||||||| |||      |   |  |   || |  | |      | | | |||      |    ||  || || |    ||  ||   ||||||    ||| |   |                                                    
GATTTCAAGATCCAGAACATTGTTGGTTCATGTGATGTCAAATTTCCTATTCGCCTGGAGGGCCTTGCTTATTCTCATGGCGCATTCTCTAGTgtaagt-tgattacttacttttttacattgtctcagaatgcatcctttgaatttccattgaaactgatgccagttgtctgataaatatcagtgtgtcatttacccatatttcatcatgcatgtcattattttgactgttcacttgcttaatttgcag

upper sequence: GLYMA09G41330.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G161418_T05 (Zea mays), 5'ss of exon 7
GATTTTAAGATTCAGAACATTGTTGGCTCTTGTGATGTCAAGTTCCCCATTCGACTTGAGGGTCTTGCCTATTCCCATGGTGCTTTCTCAAGTgtaagtgtgaagtgcaataatcatctgtttttcctggtgaatttcatggaaaaatggtcctcac----aaattcctgccctagtaatcagtcctacatatggtc
||||||||||||||||| |||||||||||||||||||||||||| || ||| | |||||||| ||||| ||||| |||||||| |||||||||||| ||   | |   |    | || |  |   |   || | | |  |       | |||  ||       ||     |  |  | ||  ||  || |       
GATTTTAAGATTCAGAATATTGTTGGCTCTTGTGATGTCAAGTTTCCAATTAGGCTTGAGGGCCTTGCATATTCTCATGGTGCCTTCTCAAGTgtatgtccaagg---atggtttattttatcaccacagtaattcttttaccctttttgtctgcattcttggataatgacatttttcatttgttttatag------

upper sequence: GLYMA09G41330.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G149238_T04 (Zea mays), 5'ss of exon 6
GATTTTAAGATTCAGAACATTGTTGGCTCTTGTGATGTCAAGTTCCCCATTCGACTTGAGGGTCTTGCCTATTCCCATGGTGCTTTCTCAAGTgtaagtgtgaagtgcaataatcatctgtttttcctggtgaatttcatggaaaaatggtcctcacaaattcctgccctagtaatcag--tcctacatatggtc-----
|| |||||||||||||| |||||||||||||||||||| ||||| || ||| | |||||||| ||||||||||| |||||||| |||||||||||| ||        |||| ||    | ||||  |     |||||  |  |       |  |       |||   | | | | |     |  | ||| || |      
GACTTTAAGATTCAGAATATTGTTGGCTCTTGTGATGTAAAGTTTCCAATTAGGCTTGAGGGCCTTGCCTATTCTCATGGTGCCTTCTCAAGTgtatgtc-------caatgattgcttattttggcatcacaatttttttta----cctttttttttgtctcccttcttggaatttgacatttttcatttgttttacag

upper sequence: GLYMA09G41330.1 (Glycine max), 5'ss of exon 7
lower sequence: AT3G13445.1 (Arabidopsis thaliana), 5'ss of exon 7
GATTTTAAGATTCAGAACATTGTTGGCTCTTGTGATGTCAAGTTCCCCATTCGACTTGAGGGTCTTGCCTATTCCCATGGTGCTTTCTCAAGTgtaagtgtgaagtgcaataatcatctgtttttcctgg--tgaatttcatgga--aaaatggtcctcacaaattcctgccctagtaatcagtcctacatatggtc--
||||| ||||||||||| ||||| || |||||||||||||| ||||| ||  ||||||| |||||||| || || || | ||||||||||||||| ||||     |    ||  ||| |  |  ||  ||   || ||| |  ||  |||| | |   |  |    | |  |||     |||      | | ||||   
GATTTCAAGATTCAGAATATTGTAGGTTCTTGTGATGTCAAATTCCCTATAAGACTTGAAGGTCTTGCTTACTCTCACGCTGCTTTCTCAAGTgtgagtg-atcttaacttatacatttagtagtcaaggaccgacttttagagataaaaacgttgtgctgatggccattacctctctctcatattggcgtgtggttag

upper sequence: GLYMA09G41330.1 (Glycine max), 5'ss of exon 7
lower sequence: AT1G55520.1 (Arabidopsis thaliana), 5'ss of exon 7
GATTTTAAGATTCAGAACATTGTTGGCTCTTGTGATGTCAAGTTCCCCATTCGACTTGAGGGTCTTGCCTATTCCCATGGTGCTTTCTCAAGTgtaagtg---tgaagtgcaataatcatctgtttttcctggtgaatttcatggaaaaatggtcctcacaaattcctgccctagtaatcagtcctacatatggtc
||||||||||| ||||||||||| ||||| ||||||||||| ||||||||| | ||||| |||||||| || || ||| |||||||||||||||||||||   | |||     | ||||| | |  ||    || |  |   ||  ||  | |  || |  | ||| | ||    | |||| |  | |        
GATTTTAAGATACAGAACATTGTAGGCTCATGTGATGTCAAATTCCCCATTAGGCTTGAAGGTCTTGCATACTCTCATAGTGCTTTCTCAAGTgtaagtgatctcaagcattgtgatcatatatactt----gtaacatgggtgttaa--tcggtctgatga-ttcatacctctctcatcattgatgccag-----

upper sequence: GLYMA09G41330.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv06s0004g00180.t01 (Vitis vinifera), 5'ss of exon 7
GATTTTAAGATTCAGAACATTGTTGGCTCTTGTGATGTCAAGTTCCCCATTCGACTTGAGGGTCTTGCCTATTCCCATGGTGCTTTCTCAAGTgtaagtg-tgaagtgcaataatcatctgtttttcctggtgaatttcatggaaaaatggtcctcacaaattcctgccctagtaatcagtcctacatatggtc-
|||||||||||||||||||| |||||||| |||||||| || ||||||||  | ||||| || ||||| ||||| |||||||| || || || ||||||| |||  |    |    |  |   ||   |  | | |||  || |||||||     ||   | |   |   |  |  | |  |  |  |  |  | 
GATTTTAAGATTCAGAACATAGTTGGCTCCTGTGATGTTAAATTCCCCATAAGGCTTGAAGGCCTTGCATATTCTCATGGTGCCTTTTCCAGCgtaagtgatgacattgttttcggagttcaattatttatttatttttctgtaaaaatgtgaaccat--acttgggaagtcatgtttaaactaaggttggaaca

upper sequence: GLYMA09G41330.1 (Glycine max), 5'ss of exon 7
lower sequence: EFJ04980 (Selaginella moellendorffii), 5'ss of exon 6
GATTTTAAGATTCAGAACATTGTTGGCTCTTGTGATGTCAAGTTCCCCATTCGACTTGAGGGTCTTGCCTATTCCCATGGTGCTTTCTCAAGTgtaagtgtgaagtgcaataatcatctgtttttcctggtgaatttcatggaaaaatggtcctcacaaattcctgccctagtaatcagtcctacatatggtc
||||||||||| ||||||||||||||||| || || || |||||||| ||  || | ||||| || || ||  | || |||   |||||||| ||||||  |   | |  |  |||    | |   ||  |   |||   ||     |  ||   | |  ||  |||                          
GATTTTAAGATCCAGAACATTGTTGGCTCCTGCGACGTTAAGTTCCCGATCAGATTGGAGGGCCTGGCGTACGCTCACGGTCACTTCTCAAGCgtaagt-cgtgcttcctttgtcacacttatactcttttctcttttgcgggtc--ttatcactaaagttttgtgcag------------------------

upper sequence: GLYMA09G41330.1 (Glycine max), 5'ss of exon 7
lower sequence: EFJ36040 (Selaginella moellendorffii), 5'ss of exon 6
GATTTTAAGATTCAGAACATTGTTGGCTCTTGTGATGTCAAGTTCCCCATTCGACTTGAGGGTCTTGCCTATTCCCATGGTGCTTTCTCAAGTgtaagtgtgaagtgcaataatcatctgtttttcctggtgaatttcatggaaaaatggtcctcacaaattcctgccctagtaatcagtcctacatatggtc
||||||||||| ||||||||||||||||| ||||| || |||||||| ||  || | ||||| || || ||  | || |||   |||||||| ||||||  |   | |  |  |||    |     ||  |   |||   ||     |  ||   | |  ||  |||                          
GATTTTAAGATCCAGAACATTGTTGGCTCCTGTGACGTTAAGTTCCCGATCAGATTGGAGGGCCTGGCGTACGCTCACGGTCACTTCTCAAGCgtaagt-cgtgcttcctttgtcacacttacactcttttctcttttgcgggtc--ttatcactaaagttttgtgcag------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254334605|gb|GR844390.1|GR844390
EST:     TCCCCATTCGACTTGAGGGTCTTGCCTATTCCCATGGTGCTTTCTCAAGT                         TATGAACCAGAGCTGTTTCCAGGACTAATCTATCGCATGAAGCAACCCAAG
genomic: TCCCCATTCGACTTGAGGGTCTTGCCTATTCCCATGGTGCTTTCTCAAGTgtaagtgtga ... ttgttggtagTATGAACCAGAGCTGTTTCCAGGACTAATCTATCGCATGAAGCAACCCAAG
EST: gi|6951767|gb|AW423835.1|AW423835
EST:     CCATTCGACTTGAGGGTCTTGCCTATTCCCATAGTGCTTTCTCAAGT                         TATGAACCAGAGCTGTTTCCCGGACTAATCTATCGCATGAAGCAACCCAAG
genomic: CCATTCGACTTGAGGGTCTTGCCTATTCCCATGGTGCTTTCTCAAGTgtaagtgtga ... ttgttggtagTATGAACCAGAGCTGTTTCCAGGACTAATCTATCGCATGAAGCAACCCAAG
EST: gi|6915664|gb|AW397194.1|AW397194
EST:     TCCCCATTCGACTTGAGGGTCTTGCCTATTCCCATGGTGCTTTCTCAAGT                         TATGAACCAGAGCTGTTTCCAGGACTAATCTATCGCATGAAGCAACCCAAG
genomic: TCCCCATTCGACTTGAGGGTCTTGCCTATTCCCATGGTGCTTTCTCAAGTgtaagtgtga ... ttgttggtagTATGAACCAGAGCTGTTTCCAGGACTAATCTATCGCATGAAGCAACCCAAG