1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AGAGTACATGGCACCTGAAATTATTCTTGGCAAAGGCCATGATAAGGCTGCTGATTGGTGGAGCGTAGGTATTCTACTGTTTGAGATGCTTACTGGAAAGgtttgcatcttgttccttgttaatttgtaagactggtttttcttatggagttttgattgcaaggttttgattggctataggataatagtgtaccttcttg...
species | Glycine max |
transcript | GLYMA09G41010.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CTGATTGGTGGAGCGTAGGTATTCTACTGTTTGAGATGCTTACTGGAAAG CCGCCTTTCTGTGGCGGAAACCGTGACAAAATTCAGCAGAAGATAGTTAAAEST: gi|254318697|gb|GR828641.1|GR828641
genomic: CTGATTGGTGGAGCGTAGGTATTCTACTGTTTGAGATGCTTACTGGAAAGgtttgcatct ... tcctctgcagCCGCCTTTCTGTGGCGGAAACCGTGACAAAATTCAGCAGAAGATAGTTAAA
EST: CTGATTGGTGGAGCGTAGGTATTCTACTGTTTGAGATGCTTACTGGAAAG CCGCCTTTCTGTGGCGGAAACCGTGACAAAATTCAGCAGAAGATAGTTAAAEST: gi|57575668|gb|CX548643.1|CX548643
genomic: CTGATTGGTGGAGCGTAGGTATTCTACTGTTTGAGATGCTTACTGGAAAGgtttgcatct ... tcctctgcagCCGCCTTTCTGTGGCGGAAACCGTGACAAAATTCAGCAGAAGATAGTTAAA
EST: CTGATTGGTGGAGCGTAGGTATTCTACTGTTTGAGATGCTTACTGGAAAG CCGCCTTTCTGTGGCGGAAACCGTGACAAAATTCAGCAGAAGATAGTTAAAEST: gi|298163696|gb|HO012429.1|HO012429
genomic: CTGATTGGTGGAGCGTAGGTATTCTACTGTTTGAGATGCTTACTGGAAAGgtttgcatct ... tcctctgcagCCGCCTTTCTGTGGCGGAAACCGTGACAAAATTCAGCAGAAGATAGTTAAA
EST: CTGATTGGTGGAGCGTAGGTATTCTACTGTTTGAGATGCCTACTGGAAAG CCGCCTTTCTGTGGCGGAAACCGTGACAAAATTCAGCAGAAGATAGTTAAA
genomic: CTGATTGGTGGAGCGTAGGTATTCTACTGTTTGAGATGCTTACTGGAAAGgtttgcatct ... tcctctgcagCCGCCTTTCTGTGGCGGAAACCGTGACAAAATTCAGCAGAAGATAGTTAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAGTACATGGCACCTGAAATTATTCTTGGCAAAGGCCATGATAAGGCTGCTGATTGGTGGAGCGTAGGTATTCTACTGTTTGAGATGCTTACTGGAAAGgtttgcatcttgttccttgttaatttgtaagactggtttttcttatggagttttgattgcaaggttttgattggctataggataatagtgtaccttcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG