Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGTGACTCTGGGATTACATTCAATGAACAACCATTAATGAAAGCATTGCAGATTGCTGAAAAGGCTAGGGATGCTATTCTTAGCGGGAAATTTGATCAGgtaactaaatggttcaccgtgattttgggaatcgtgatctaattaaacttttatttactctcttattttgtctgttgtatag

Basic information

species Glycine max
transcript GLYMA09G40690.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G40690.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv08s0056g00200.t01 (Vitis vinifera), 5'ss of exon 6
CAGTGACTCTGGGATTACATTCAATGAACAACCATTAATGAAAGCATTGCAGATTGCTGAAAAGGCTAGGGATGCTATTCTTAGCGGGAAATTTGATCAGgtaactaaatggttcaccgtg----attttgggaatcgtgatctaa-ttaaacttttatttactctcttattttgtctgttgtatag
|||||| ||||| |||||||| ||||   |||||   ||||| ||| || |||||||||||||||| ||||||||||| || ||| | |||||  | ||||||| ||   |  |   | |     ||||  |  | | || |  ||  | |||   |||||  | | || |    ||| |||| |||
CAGTGATTCTGGAATTACATTTAATGTCAAACCAAAGATGAAGGCAGTGGAGATTGCTGAAAAGGCAAGGGATGCTATCCTCAGCCGCAAATTCCACCAGgtaattagtggacttggcatagggtatttgagacaacatggttcaagctgaacaaatatttgatttgtt-tcacatct-ttgtttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6134275|gb|AW132668.1|AW132668
EST:     AGGGATGCTATTCTTAGCGGGAAATTTGATCAG                         GTACGCGTCAACCTTCCAAATGGTGACATGGTGGGGCATACAGGTGACATT
genomic: AGGGATGCTATTCTTAGCGGGAAATTTGATCAGgtaactaaat ... tgttgtatagGTACGCGTCAACCTTCCAAATGGTGACATGGTGGGGCATACAGGTGACATT
EST: gi|17964652|gb|BM271384.1|BM271384
EST:     AGATTGCTGAAAAGGCTAGGGATGCTATTCTTAGCGGGAAATTTGATCAG                         GTACGCGTCAACCTTCCAAATGGTGACATGGTGGGGCATACAGGTGACATT
genomic: AGATTGCTGAAAAGGCTAGGGATGCTATTCTTAGCGGGAAATTTGATCAGgtaactaaat ... tgttgtatagGTACGCGTCAACCTTCCAAATGGTGACATGGTGGGGCATACAGGTGACATT
EST: gi|7925554|gb|AW831589.1|AW831589
EST:     AGATTGCTGAAAAGGCTANGGATGCTATTCTTAGCGGGAAATNTGATCAG                         GTACGCGTCAACCTTCCAAATGGTGACATGGTGGGGCATACAGGTGACATT
genomic: AGATTGCTGAAAAGGCTAGGGATGCTATTCTTAGCGGGAAATTTGATCAGgtaactaaat ... tgttgtatagGTACGCGTCAACCTTCCAAATGGTGACATGGTGGGGCATACAGGTGACATT
EST: gi|33387910|gb|CA851117.1|CA851117
EST:     AGATTGCTGAAAAGGCTAGGGATGCTATTCTTAGCGGGAAATTTGATCAG                         GTACGCGTCAACCTTCCAAATGGTGACATGGTGGGGCATACAGGTGACATT
genomic: AGATTGCTGAAAAGGCTAGGGATGCTATTCTTAGCGGGAAATTTGATCAGgtaactaaat ... tgttgtatagGTACGCGTCAACCTTCCAAATGGTGACATGGTGGGGCATACAGGTGACATT
EST: gi|254346935|gb|GR856657.1|GR856657
EST:     AGATTGCTGAAAAGGCTAGGGATGCTATTCTTAGCGGGAAATTTGATCAG                         GTACGCGTCAACCTTCCAAATGGTGACATGGTGGGGCATACAGGTGACATT
genomic: AGATTGCTGAAAAGGCTAGGGATGCTATTCTTAGCGGGAAATTTGATCAGgtaactaaat ... tgttgtatagGTACGCGTCAACCTTCCAAATGGTGACATGGTGGGGCATACAGGTGACATT
EST: gi|151401069|gb|EV270883.1|EV270883
EST:     AGATTGCTGAAAAGGCTAGGGATGCTATTCTTAGCGGGAAATTTGATCAG                         GTACGCGTCAACCTTCCAAATGGTGACATGGTGGGGCATACAGGTGACATT
genomic: AGATTGCTGAAAAGGCTAGGGATGCTATTCTTAGCGGGAAATTTGATCAGgtaactaaat ... tgttgtatagGTACGCGTCAACCTTCCAAATGGTGACATGGTGGGGCATACAGGTGACATT
EST: gi|254346385|gb|GR856107.1|GR856107
EST:     AGATTGCTGAAAAGGCTAGGGATGCTATTCTTAGCGGGAAATTTGATCAG                         GTACGCGTCAACCTTCCAAATGGTGACATGGTGGGGCATACAGGTGACATT
genomic: AGATTGCTGAAAAGGCTAGGGATGCTATTCTTAGCGGGAAATTTGATCAGgtaactaaat ... tgttgtatagGTACGCGTCAACCTTCCAAATGGTGACATGGTGGGGCATACAGGTGACATT
EST: gi|10845255|gb|BF068411.1|BF068411
EST:     AGATTGCTGAAAAGGCTAGGGATGCTATTCTTAGCGGGAAATTTGATCAG                         GTACGCGTCAACCTTCCAAATGGTGACATGGTGGGGCATACAGGTGACATT
genomic: AGATTGCTGAAAAGGCTAGGGATGCTATTCTTAGCGGGAAATTTGATCAGgtaactaaat ... tgttgtatagGTACGCGTCAACCTTCCAAATGGTGACATGGTGGGGCATACAGGTGACATT
EST: gi|17401042|gb|BM177824.1|BM177824
EST:     CTGAAAAGGCTAGGGATGCTATTCTTAGCGAGAAATTTGATCAG                         GTACGCGTCAACCTTCCAAATGGTGACATGGTGGGGCATACAGGTGACATT
genomic: CTGAAAAGGCTAGGGATGCTATTCTTAGCGGGAAATTTGATCAGgtaactaaat ... tgttgtatagGTACGCGTCAACCTTCCAAATGGTGACATGGTGGGGCATACAGGTGACATT
EST: gi|298181410|gb|HO022849.1|HO022849
EST:     AGATTGCTGAAAAGGCTAGGGATGCTATTCTTAGCGGGAAATTTGATCAG                         GTACGCGTCAACCTTCCAAATGGTGACATGGTGGGGCATACAAGTGACATT
genomic: AGATTGCTGAAAAGGCTAGGGATGCTATTCTTAGCGGGAAATTTGATCAGgtaactaaat ... tgttgtatagGTACGCGTCAACCTTCCAAATGGTGACATGGTGGGGCATACAGGTGACATT
EST: gi|254321595|gb|GR824912.1|GR824912
EST:     AGATTGCTGAAAAGGCTAGGGATGCTATTCTTAGCGGGAAATTTGATCAG                         GTACGCGTCAACCTTCCAAATGGTGACATGGTGGGGCATACAGGTGACATT
genomic: AGATTGCTGAAAAGGCTAGGGATGCTATTCTTAGCGGGAAATTTGATCAGgtaactaaat ... tgttgtatagGTACGCGTCAACCTTCCAAATGGTGACATGGTGGGGCATACAGGTGACATT
EST: gi|254344788|gb|GR855552.1|GR855552
EST:     AGATTGCTGAAAAGGCTAGGGATGCTATTCTTAGCGGGAAATTTGATCAG                         GTACGCGTCAACCTTCCAAATGGTGACATGGTGGGGCATACAGGTGACATT
genomic: AGATTGCTGAAAAGGCTAGGGATGCTATTCTTAGCGGGAAATTTGATCAGgtaactaaat ... tgttgtatagGTACGCGTCAACCTTCCAAATGGTGACATGGTGGGGCATACAGGTGACATT
EST: gi|10845312|gb|BF068459.1|BF068459
EST:     AGATTGCTGAAAAGGCTAGGGATGCTATTCTTAGCGGGAAATTTGATCAG                         GTACGCGTCAACCTTCCAAATGGTGACATGGTGGGGCATACAGGTGACATT
genomic: AGATTGCTGAAAAGGCTAGGGATGCTATTCTTAGCGGGAAATTTGATCAGgtaactaaat ... tgttgtatagGTACGCGTCAACCTTCCAAATGGTGACATGGTGGGGCATACAGGTGACATT
EST: gi|254346934|gb|GR856656.1|GR856656
EST:     AGATTGCTGAAAAGGCTAGGGATGCTATTCTTAGCGGGAAATTTGATCAG                         GTACGCGTCAACCTTCCAAATGGTGACATGGTGGGGCATACAGGTGACATT
genomic: AGATTGCTGAAAAGGCTAGGGATGCTATTCTTAGCGGGAAATTTGATCAGgtaactaaat ... tgttgtatagGTACGCGTCAACCTTCCAAATGGTGACATGGTGGGGCATACAGGTGACATT