Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATGAAGACTCACAGAGATGCCTTTGTGACTTCATTAGCAAAGTTTACCTCCCTGCATTCTCCTGCTGACATTAAGCAGAAAAACATAGATGCAATCAAGgttggtaaattataatcctttttagctggcttatgaatagctccaaattgaggggtaattggcggttttagttttgtttttatttaaaaaagtatcattt...

Basic information

species Glycine max
transcript GLYMA09G40480.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G40480.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G058870_T01 (Zea mays), 5'ss of exon 6
CATGAAGACTCACAGAGATGCCTTTGTGACTTCATTAGCAAAGTTTACCTCCCTGCATTCTCCTGCTGACATTAAGCAGAAAAACATAGATGCAATCAAGgttggtaaattataatcctttttagctggcttatgaatagctccaaattgag--gggtaattggcggttttagttttgtttttatttaaaaaagtatcattt
 ||||||||||| |||||||| ||| | |||||| | || |||||||| || || || ||| ||||||| ||||||||||||||  | || || || |||||| |     | || |      || |||       |   ||||   | |  |  ||   |||  |  | ||   ||  |  || || |||| |  || |   
AATGAAGACTCAAAGAGATGCATTTATCACTTCACTTGCCAAGTTTACATCACTTCACTCTGCTGCTGATATTAAGCAGAAAAATGTTGAAGCCATTAAGgtttgctctgtttattaagacataactgttaagccatctgctcttcacttggttggaccattctcaatctt--cttaatgcttgttgaaaagatcataacaa

upper sequence: GLYMA09G40480.1 (Glycine max), 5'ss of exon 6
lower sequence: AT3G60860.1 (Arabidopsis thaliana), 5'ss of exon 6
CATGAAGACTCACAGAGATGCCTTTGTGACTTCATTAGCAAAGTTTACCTCCCTGCATTCTCCTGCTGACATTAAGCAGAAAAACATAGATGCAATCAAGgttggtaaattataatcctttttagctggcttatgaatagctccaaattgaggg--gtaattggcggttttagttttgtttttatttaaaaaagtatcattt
 |||||||| || |||||||| |||||||||||| |||| ||||| || || || || || || ||||| || ||||||| ||| || || || || ||||||||||  || || | | ||   | |  | |     | | |   ||| |   |  |||           |  | |   | ||   || |       ||| |
AATGAAGACCCATAGAGATGCTTTTGTGACTTCACTAGCGAAGTTCACTTCACTTCACTCCCCAGCTGATATCAAGCAGAGAAATATTGAAGCCATTAAGgttggta--ttctacttcattaaggtttacgtgattgttgtttgtaatagttcgctgtaccaaaaaaacatgatatgtatcttgagtatactttccccatct

upper sequence: GLYMA09G40480.1 (Glycine max), 5'ss of exon 6
lower sequence: AT1G01960.1 (Arabidopsis thaliana), 5'ss of exon 6
CATGAAGACTCACAGAGATGCCTTTGTGACTTCATTAGCAAAGTTTACCTCCCTGCATTCTCCTGCTGACATTAAGCAGAAAAACATAGATGCAATCAAGgttggtaaattataatcctttttagctggcttatgaatagctccaaattgaggggtaattggc-ggttttagttttgtttt-tatttaaaaaagtatcattt
| | || || |||||||||||||||||||||||| ||||||| ||||| ||||| || ||||||||||| || ||||| |||||||| || ||||| |||||| |||| || |    |    |   |       | | |   | | || | ||     |      ||||||  ||| |  | |  |      || ||     
CTTAAAAACGCACAGAGATGCCTTTGTGACTTCACTAGCAAAATTTACTTCCCTCCACTCTCCTGCTGATATCAAGCAAAAAAACATTGAAGCAATAAAGgtttgtaacttttttctcaacctta-tattcagggtacaaaacgagataggggaaatctcatttagttttaagtttatcctatgctggggctagcattcac-

upper sequence: GLYMA09G40480.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv15s0048g00800.t01 (Vitis vinifera), 5'ss of exon 6
CATGAAGACTCACAGAGATGCCTTTGTGACTTCATTAGCAAAGTTTACCTCCCTGCATTCTCCTGCTGACATTAAGCAGAAAAACATAGATGCAATCAAGgttggtaa---attataatcctttttagctg-------gcttatgaatagctccaaattgaggggtaattggcggttttagttttgtttttatttaaaaaagtatcattt
|||||||||||| |||||||| |||||||||||| ||||||||||||||||||| || || |||||||| || || || |||||||||||||| ||||||||| ||      ||| | ||  | |||  ||       | ||  |||||     |||||||    || || |||||  || ||  |||||| | | || | |        
CATGAAGACTCATAGAGATGCTTTTGTGACTTCACTAGCAAAGTTTACCTCCCTCCACTCACCTGCTGATATCAAACAAAAAAACATAGATGCCATCAAGgttagtttcttgttacattctatcttaaatgctgtagaggttgggaataagctaaaattgaat--tagttagcggtcctacttgagtttttctgttaagagg--------