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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTAAGGCAGCAGGAATTAGGTGTCCTACGCCATATCTTCTGAGGCTACATGTTCTGGTTATGGAATTTATAGgtattacttttgttttgaattttagagtatcatctggtgactgatcaatgtgattatgtgatcatttttagaatataattaggtgttctacaccatatca...

Basic information

species Glycine max
transcript GLYMA09G39750.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G39750.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os07g06820.1 (Oryza sativa), 5'ss of exon 6
GCTTAAGGCAGCAGGAATTAGGTGTCCTACGCCATATCTTCTGAGGCTACATGTTCTGGTTATGGAATTTATAGgtattacttttgttttga-attttagagt--atcatctggtgactgatcaatgtgattatgtgatcatttttagaatataattaggtgttctacaccatatca--------------------------------------------------
  ||   ||||| |||||  | || || |  ||||  || |||||||| ||||| ||||| ||||||||||||||||  |||| |||||| | ||||   | |        ||   |||  || || |    |   | | |  ||| ||   |  |||    || |  |   |||                                                    
AGTTGGAGCAGCTGGAATCCGATGCCCAAAACCATTGCTCCTGAGGCTTCATGTACTGGTGATGGAATTTATAGgtaaaacttgtgttttaacatttgtcaattggatgcttgtcaacttctctatctataaaaagggtaaaatttggatgcttgttaacatttgtcaattctatggaattatcaataattcagtacatcttgtaattcgatttggttttccttcag