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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAACACCATGGTTATTCTTTAGGGACATGCTTAAAGGAATTTTCCTTTCTGTAATAATTGGTCCACCTATTGTGGCTGCAATCATTGTAATAGTACAGgtaaaatcttctgctatttaaaataactatcactttaaaacttagcttgatatttggatttcctagctgttcttgatttagagttatttttggttttgattttctattttaatgttcatgtgaattttggcag

Basic information

species Glycine max
transcript GLYMA09G39150.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G39150.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv15s0046g02040.t01 (Vitis vinifera), 5'ss of exon 6
CAAACACCATGGTTATTCTTTAGGGACATGCTTAAAGGAATTTTCCTTTCTGTAATAATTGGTCCACCTATTGTGGCTGCAATCATTGTAATAGTACAGgtaa---aatcttctgctatttaaaataactatcactttaaaacttagcttgatatttggatttcctagctgttcttgatttagagttatttttggttttgattttctattttaatgttcatgtgaattttggcag-------------------------------
||||||   ||||||||||||||||||||| | |||||||||    | ||  |  || |||| ||||| || ||||||||||||||||| |||||||||||||   ||| | ||  |||| |||| | |||    ||  |    |||| |    ||  ||||| | |  || | | |  |   | || | |    | ||    ||   |  | |   ||| | |   | |   ||                               
CAAACAATTTGGTTATTCTTTAGGGACATGTTCAAAGGAATTGGGTTATCCATTTTACTTGGGCCACCCATCGTGGCTGCAATCATTGTTATAGTACAGgtaacataatttgctaatattgaaaacagctagaggtt--atttgtagcatttagttgtgattttccacatgatttagtctcttatttttctgcattcttctgctttcctcattactgtcaagcgttctctaatagtgactaacaatgttcatttgcttggtggcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207843659|gb|GD813872.1|GD813872
EST:     CTGTAATAATTGGTCCGCCTATTGTGGCTGCAATCATTGTAATAGTACAG                         AAAGGAGGTCCATACTTGGCCATCTATCTTTGGGTTTTTACGTTTGGTCTT
genomic: CTGTAATAATTGGTCCACCTATTGTGGCTGCAATCATTGTAATAGTACAGgtaaaatctt ... attttggcagAAAGGAGGTCCATACTTGGCCATCTATCTTTGGGTTTTTACGTTTGGTCTT
EST: gi|193463989|gb|FK428319.1|FK428319
EST:     CTGTAATAATTGGTCCACCTATTGTGGCTGCAATCATTGTAATAGTACAG                         AAAGGAGGTCCATACTTGGCCATCTATCTTTGGGTTTTTACGTTTGGTCTT
genomic: CTGTAATAATTGGTCCACCTATTGTGGCTGCAATCATTGTAATAGTACAGgtaaaatctt ... attttggcagAAAGGAGGTCCATACTTGGCCATCTATCTTTGGGTTTTTACGTTTGGTCTT
EST: gi|192302658|gb|FG994896.1|FG994896
EST:     CTGTAATAATTGGTCCACCTATTGTGGCTGCAATCATTGTAATAGTACAG                         AAAGGAGGTCCATACTTGGCCATCTATCTTTGGGTTTTTACGTTTGGTCTT
genomic: CTGTAATAATTGGTCCACCTATTGTGGCTGCAATCATTGTAATAGTACAGgtaaaatctt ... attttggcagAAAGGAGGTCCATACTTGGCCATCTATCTTTGGGTTTTTACGTTTGGTCTT
EST: gi|207689928|gb|GD672433.1|GD672433
EST:     CTGTAATAATTGGTCCACCTATTGTGGCTGCAATCATTGTAATAGTACAG                         AAAGGAGGTCCATACTTGGCCATCTATCTTTGGGTTTTTACGTTTGGTCTT
genomic: CTGTAATAATTGGTCCACCTATTGTGGCTGCAATCATTGTAATAGTACAGgtaaaatctt ... attttggcagAAAGGAGGTCCATACTTGGCCATCTATCTTTGGGTTTTTACGTTTGGTCTT
EST: gi|151398881|gb|EV268752.1|EV268752
EST:     GTAATAATTTGGTCCACCTATTGTGGCTGCAATCATTTGTAATAGTACAG                         A
genomic: GTAATAA-TTGGTCCACCTATTGTGGCTGCAATCA-TTGTAATAGTACAGgtaaaatctt ... attttggcag-
EST: gi|151398881|gb|EV268752.1|EV268752
EST:     GTAATAATTTGGTCCACCTATTGTGGCTGCAATCATTTGTAATAGTACAG                         A
genomic: GTAATAA-TTGGTCCACCTATTGTGGCTGCAATCA-TTGTAATAGTACAGgtaaaatctt ... attttggcag-
EST: gi|5175463|gb|AI759796.1|AI759796
EST:     GTAATAATTGGTCCACCTA-TGTGGNCTGCAATCA-TGTAAATAGTACAG                         AAGGGAGGTCCATACTTGGCCATCTATCTTGGGGTTTTTACGTTGGGTCTT
genomic: GTAATAATTGGTCCACCTATTGTGG-CTGCAATCATTGT-AATAGTACAGgtaaaatctt ... attttggcagAAAGGAGGTCCATACTTGGCCATCTATCTTTGGGTTTTTACGTTTGGTCTT
EST: gi|5175455|gb|AI759788.1|AI759788
EST:     ATTGGTCCACCTA-TGATGGCTGCAATCA-TGTAAATAGTACAG                         -AAGGAGGATCCATACTTGGCCATCTATCTATGAG-TTTTACGTTTGGTCT
genomic: ATTGGTCCACCTATTG-TGGCTGCAATCATTGT-AATAGTACAGgtaaaatctt ... attttggcagAAAGGAGG-TCCATACTTGGCCATCTATCTTTGGGTTTTTACGTTTGGTCT