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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGTTTGTATTTGCTAGTCATAGTTTTGATGTTTGGGAGAACTGGACTCTAGAAGGTTCCTTACAGGAATGCAGACTGGTGAACTGTAGAAACCCATCAgtaagttctctttgttatctttatgtaattctgttgcaatctatctatatttgatacatatatgagatttagatggttcctctgcaatctggtaactagt...

Basic information

species Glycine max
transcript GLYMA09G39090.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G39090.1 (Glycine max), 5'ss of exon 6
lower sequence: AT1G01510.1 (Arabidopsis thaliana), 5'ss of exon 6
GGAGTTTGTATTTGCTAGTCATAGTTTTGATGTTTGGGAGAACTGGACTCTAGAAGGTTCCTTACAGGAATGCAGACTGGTGAACTGTAGAAACCCATCAgtaagttctctttgttatctttatgtaattctg--ttgcaatctatctatatttgatacatatatgagatttagatggttcct-ctgcaatctggtaactagt
||||||||| |||||||| ||||||||||| || |||||||  |||| ||||||||||||  |  | |||||  | || || ||||| || ||  | || |||||| |||| |  |  |   |  |    |    ||| ||        |  |||  | | | |    ||||   |  |   |  ||||              
GGAGTTTGTGTTTGCTAGCCATAGTTTTGACGTGTGGGAGAGTTGGAGTCTAGAAGGTTCTCTGGACGAATGTCGGCTTGTTAACTGCAGGAATTCCTCTgtaagt-ctctgtccttacagaaaatggcccgaaattgaaaaaccctacttcttggaaaacagaaataatttgtgtaatgaatgttgcag-------------

upper sequence: GLYMA09G39090.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv15s0046g02250.t01 (Vitis vinifera), 5'ss of exon 6
GGAGTTTGTATTTGCTAGTCATAGTTTTGATGTTTGGGAGAACTGGACTCTAGAAGGTTCCTTACAGGAATGCAGACTGGTGAACTGTAGAAACCCATCAgtaagttctctttgttatctttatgtaattctgttgcaatctatctatatttgatacatatatgagattta-gatggttcctctgcaatctggtaactagt----
||| ||||||||||| ||||| || ||||||||||||||||  ||||   | |||||||| ||  ||||||| ||  |||| ||||||||||| ||||  ||||| || |||  ||  ||| | |      | ||||   |||  |   ||   |  ||| ||     | |  ||      | |   || | | |  |||     
GGAATTTGTATTTGCCAGTCACAGCTTTGATGTTTGGGAGAGTTGGATGTTGGAAGGTTCTTTGGAGGAATGTAGGTTGGTCAACTGTAGAAATCCATTGgtaagctc-cttgcttgacttaaagattcaatattgc---ctaattgggttcagt-tataaatcctcctaacaataaactttttatcattttgaacatagatgac
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10847909|gb|BF070497.1|BF070497
EST:     TAGAAGGTTCCTTACAGGAATGCAGACTGGTGAACTGTAGAAACCCATCA                         GCTGTTTTGGATGTACGCGTTGAGATTTTGGCAACTGTAGGCGAAGATGGA
genomic: TAGAAGGTTCCTTACAGGAATGCAGACTGGTGAACTGTAGAAACCCATCAgtaagttctc ... caaacaatagGCTGTTTTGGATGTACGCGTTGAGATTTTGGCAACTGTAGGCGAAGATGGA
EST: gi|12689553|gb|BG155889.1|BG155889
EST:     TAGAAGGTTCCTTACAGGAATGCAGACTGGTGAACTGTAGAAACCCATCA                         GCTGTTTTGGATGTACGCGTTGAGATTTTGGCAACTGTAGGCGAAGATGGA
genomic: TAGAAGGTTCCTTACAGGAATGCAGACTGGTGAACTGTAGAAACCCATCAgtaagttctc ... caaacaatagGCTGTTTTGGATGTACGCGTTGAGATTTTGGCAACTGTAGGCGAAGATGGA
EST: gi|15814169|gb|BI786444.1|BI786444
EST:     TAGAAGGTTCCTTACAGGAATGCAGACTGGTGAACTGTAGAAACCCATCA                         GCTGTTTTGGATGTACGCGTTGAGATTTTGGCAACTGTAGGCGAAGATGGA
genomic: TAGAAGGTTCCTTACAGGAATGCAGACTGGTGAACTGTAGAAACCCATCAgtaagttctc ... caaacaatagGCTGTTTTGGATGTACGCGTTGAGATTTTGGCAACTGTAGGCGAAGATGGA