Sequence
atgc intronic sequence ATGC exonic sequenceTGGCTTGTTGGATCACAATACAAACCAATGGAGTTGGCAAAATCAGACTGGGATGCAATTAAGAAGTCTCCTCCATGGGCCATTGATTCTTGGGGCATGGgtatgttgttttctgttccttttgatgatagttcatagtgatagcaaattggtttatatggtgcaatagaacacgggaacaatctgctatttttgtgtct...
Basic information
species | Glycine max |
transcript | GLYMA09G38740.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA09G38740.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os01g60440.1 (Oryza sativa), 5'ss of exon 6
TGGCTTGTTGGATCACAATACAAACCAATGGAGTTGGCAAAATCAGACTGGGATGCAATTAAGAAGTCTCCTCCATGGGCCATTGATTCTTGGGGCATGGgtatgttgttttctgttccttttgatgatagttcatagtgatagcaaattggtttatatggtgcaatagaacacgggaacaatctgctatttttgtgtct--
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TGGTTAGTTGGAACACAATATAAGCCAATGGAGCTAACAAAGTCAGATTGGGTGTCAATTAGGAAATCACCTCCATGGGCAATTGATTCCTGGGGACTGGgtaagcagagctaactccttttccttcattacattcttgtttgattgttctgtttccataattt--tacaattcggaaactgttcaacagttccttgtcgga
upper sequence: GLYMA09G38740.1 (Glycine max), 5'ss of exon 6
lower sequence: AC218972.3_FGT001 (Zea mays), 5'ss of exon 6
TGGCTTGTTGGATCACAATACAAACCAATGGAGTTGGCAAAATCAGACTGGGATGCAATTAAGAAGTCTCCTCCATGGGCCATTGATTCTTGGGGCATGGgtatgttgttttctgttccttttgatgatagttcatagtg-atagcaaattggtttatatggtgca-atagaacac---gggaacaatctgctatttttgtgtct
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TGGTTAGTTGGAACACAGTACAAGCCAATGGAGCTGTCAAAGTCAGATTGGGCTTCAATTAGAAAATCACCCCCATGGGCCATTGATTCTTGGGGACTAGgtgagcg----taaataactcttaatggttcctcctcatgcatgacatgcttgttatggttgtacttatatatttttttttgagtaaagtac-atttccggtcct
upper sequence: GLYMA09G38740.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G098078_T01 (Zea mays), 5'ss of exon 6
TGGCTTGTTGGATCACAATACAAACCAATGGAGTTGGCAAAATCAGACTGGGATGCAATTAAGAAGTCTCCTCCATGGGCCATTGATTCTTGGGGCATGGgtatgt---tgttttctgttccttttgatgatagttcatagtgatagcaaattggtttatatggt-----gcaatagaacacgggaacaatctgctatttttgtgtct
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TGGTTAGTTGGGATGCAATACAAGCCAATGGAGCTGTCAAAGTCAGATTGGGCTTCAATTAGAAAATCACCTCCGTGGGCCATTGATTCTTGGGGACTGGgtgagcataaatctcttgatggtttctcatgcatggcatgcttgttatggaattgtttatattttttttggttacaatatatgggagaagttg--tgttcta------
upper sequence: GLYMA09G38740.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv13s0067g03110.t01 (Vitis vinifera), 5'ss of exon 6
TGGCTTGTTGGATCACAATACAAACCAATGGAGTTGGCAAAATCAGACTGGGATGCAATTAAGAAGTCTCCTCCATGGGCCATTGATTCTTGGGGCATGGgtatgttgttttctgttccttttgatg---atagttcatagtgatagcaaattggtttatatggtgcaatagaacacgggaacaatctgctatttttgtgtct----
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TGGCTTGTTGGTTCACAATACAAACCAATGGAGTTGCTAAAGTCTGACTGGGCAGCAATCAGGAAATCTCCACCATGGGCCATTGATTCTTGGGGCTTGGgtaagtcttccactgtttccttttgtaggtatagtagat-gcgttcatagtttg--ttacataaagtggtttaata----aacgatctcttactattgtgcttccccMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|254342248|gb|GR853385.1|GR853385EST: GTCTCCTCCATGGGCCATAGATTCTTGGGGCATGG GTTGCCTAATCTATGAGGTATTCTCTGGATTGAGGTTGGGCAAAACAGAGG
genomic: GTCTCCTCCATGGGCCATTGATTCTTGGGGCATGGgtatgttgtt ... aattttatagGTTGCCTAATCTATGAGGTATTCTCTGGACTGAGGTTGGGCAAAACAGAGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGGCTTGTTGGATCACAATACAAACCAATGGAGTTGGCAAAATCAGACTGGGATGCAATTAAGAAGTCTCCTCCATGGGCCATTGATTCTTGGGGCATGGgtatgttgttttctgttccttttgatgatagttcatagtgatagcaaattggtttatatggtgcaatagaacacgggaacaatctgctatttttgtgtct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC