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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGCAAGTTTGGTGCAGTCTGTCGTTTCCATCATCCACGTGAAAGGATGATTCCTGCTCCTGACTGTGTTTTGAGTCCTATAGGTCTTCCTTTACGTCCTgtgagttgaatttttgctcttgagttccaaatatgaagtttatttttcattaagagagattttttttacctgaatttacacttcattatagttctcatag...

Basic information

species Glycine max
transcript GLYMA09G38650.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G38650.2 (Glycine max), 5'ss of exon 6
lower sequence: Vv04s0023g00370.t01 (Vitis vinifera), 5'ss of exon 6
TTGCAAGTTTGGTGCAGTCTGTCGTTTCCATCATCCACGTGAAAGGATGATTCCTGCTCCTGACTGTGTTTTGAGTCCTATAGGTCTTCCTTTACGTCCTgtgagttgaatttttgctcttgagttccaaatatgaagtttattttt--cattaagagagattttttttacctgaatttacacttca-ttatagttctcatag
||| ||||||||||| || ||| | |||||||||||  | |||||  |||| ||| |||| || |||||||||||||| ||||| || ||||||||||| ||||||||  | |||||| || ||||     |   |  ||  || ||   |||     | ||      |  ||  | |    |||   || |  |||| |   
TTGTAAGTTTGGTGCGGTTTGTAGGTTCCATCATCCCAGAGAAAGACTGATCCCTACTCCGGATTGTGTTTTGAGTCCCATAGGCCTCCCTTTACGTCCGgtgagttgcctctttgcttttcagttttgttttccattttggttattggtattgtagcatatggcaaatgtctttactgtttcttgggttttgcttctga---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|4397329|gb|AI496326.1|AI496326
EST:     TTCCTGCTCCTGACTGTGTTTTGAGTCCTATAGGTCTTCCTTTACGTCCT                         GGAGAGCCCCTGTGTGTGTTCTATTCACGTTATGGCATATGCAAATTTGGT
genomic: TTCCTGCTCCTGACTGTGTTTTGAGTCCTATAGGTCTTCCTTTACGTCCTgtgagttgaa ... tttcctacagGGAGAGCCCCTGTGTGTGTTCTATTCACGTTACGGCATATGCAAATTTGGT
EST: gi|31307304|gb|CD392507.1|CD392507
EST:     TTCCTGCTCCTGACTGTGTTTTGAGTCCTATAGGTCTTCCTTTACGTCCT                         GGAGAGCCCCTGTGTGTGTTCTATTCACGTTACGGCATATGCAAATTTGGT
genomic: TTCCTGCTCCTGACTGTGTTTTGAGTCCTATAGGTCTTCCTTTACGTCCTgtgagttgaa ... tttcctacagGGAGAGCCCCTGTGTGTGTTCTATTCACGTTACGGCATATGCAAATTTGGT
EST: gi|11413083|gb|BF425094.1|BF425094
EST:     TTCCTGCTCCTGACTGTGTTTTGAGTCCTATAGGTCTTCCTTTACGTCCT                         GGAGAGCCCCTGTGTGTGTTCTATTCACGTTATGGCATATGCAAATTTGGT
genomic: TTCCTGCTCCTGACTGTGTTTTGAGTCCTATAGGTCTTCCTTTACGTCCTgtgagttgaa ... tttcctacagGGAGAGCCCCTGTGTGTGTTCTATTCACGTTACGGCATATGCAAATTTGGT
EST: gi|9204745|gb|BE330969.1|BE330969
EST:     TTCCTGCTCCTGACTGTGTTTTGAGTCCTATAGGTCTTCCTTTACGTCCT                         GGAGAGCCCCTGTGTGTGTTCTATTCACGTTACGGCATATGCAAATGTGGT
genomic: TTCCTGCTCCTGACTGTGTTTTGAGTCCTATAGGTCTTCCTTTACGTCCTgtgagttgaa ... tttcctacagGGAGAGCCCCTGTGTGTGTTCTATTCACGTTACGGCATATGCAAATTTGGT
EST: gi|5508891|gb|AI855449.1|AI855449
EST:     TTCCTGCTCCTGACTGTGTTTTGAGTCCTATAGGTCTTCCTTTACGTCCT                         GNAGAGCCCCTGTGTGTGTTCTATTCACGTTACGGCATATGCAAATTTGGT
genomic: TTCCTGCTCCTGACTGTGTTTTGAGTCCTATAGGTCTTCCTTTACGTCCTgtgagttgaa ... tttcctacagGGAGAGCCCCTGTGTGTGTTCTATTCACGTTACGGCATATGCAAATTTGGT
EST: gi|23728273|gb|BU762185.1|BU762185
EST:     TTCCTGCTCCTGACTGTGTTTTGAGTCCTATAGGTCTTCCTTTACGTCCT                         GGAGAGCCCCTGTGTGTGTTCTATTCACGTTACGGCATATGCAAATTTGAT
genomic: TTCCTGCTCCTGACTGTGTTTTGAGTCCTATAGGTCTTCCTTTACGTCCTgtgagttgaa ... tttcctacagGGAGAGCCCCTGTGTGTGTTCTATTCACGTTACGGCATATGCAAATTTGGT
EST: gi|14991679|gb|BI317352.1|BI317352
EST:     TTCCTGCTCCTGACTGTGTTTTGAGTCCTATAGGTCTTCCTTTACCTCCT                         GGAGACGCCC-TGTGAGTGTTCTATTCACGATACGGCATATGCCAATTTGG
genomic: TTCCTGCTCCTGACTGTGTTTTGAGTCCTATAGGTCTTCCTTTACGTCCTgtgagttgaa ... tttcctacagGGAGA-GCCCCTGTGTGTGTTCTATTCACGTTACGGCATATGCAAATTTGG
EST: gi|254332007|gb|GR846210.1|GR846210
EST:     TTCCTGCTCCTGACTGTGTTTTGAGTCCTATAGGTCTTCCTTTACGTCCT                         GGAGAGCCCCTGTGTGTGTTCTATTCACGTTACGGCATATGCAAATTTGGT
genomic: TTCCTGCTCCTGACTGTGTTTTGAGTCCTATAGGTCTTCCTTTACGTCCTgtgagttgaa ... tttcctacagGGAGAGCCCCTGTGTGTGTTCTATTCACGTTACGGCATATGCAAATTTGGT
EST: gi|15000058|gb|BI320872.1|BI320872
EST:     TTCCTGCTCCTGACTGTGTTTTGAGTCCTATAGGTCTTCCTTTACGTCCT                         GGAGAGCCCCTGTGTGTGTTCTATTCACGTTATGGCATATGCAAATTTGGT
genomic: TTCCTGCTCCTGACTGTGTTTTGAGTCCTATAGGTCTTCCTTTACGTCCTgtgagttgaa ... tttcctacagGGAGAGCCCCTGTGTGTGTTCTATTCACGTTACGGCATATGCAAATTTGGT