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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGACATTGAGGTGGTGCGGATCTTGTGGGATGTTTTAATGGATGCTGTTCAGTGGTCTGGAAAAAATCAGCAACAGAATGCCAATGCAGCCCTTCGTCAGgtatcctttggatattttgcttgtatgccaaatgcagaccttgtgtacttgaggagttttgaaaattcttgttttatgagcttagtcaagttctaggttt...

Basic information

species Glycine max
transcript GLYMA09G38530.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G38530.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os11g21990.1 (Oryza sativa), 5'ss of exon 6
GGACATTGAGGTGGTGCGGATCTTGTGGGATGTTTTAATGGATGCTGTTCAGTGGTCTGGAAAAAATCAGCAACAGAATGCCAATGCAGCCCTTCGTCAGgtatcctttggatattttgcttgtatgccaaatgcagaccttgtgtacttgaggagttttgaaaattcttgttttatgagcttagtcaagttctaggttt---------
 || || ||||| || || ||  | ||||||||  | ||||| ||||||||||||||||| || || |||||||| ||| | ||| |||| ||||| ||||||    ||     ||| || |  ||   ||| ||||   | |  ||||||    || |   | ||  | |||     |||||  | || |||||  |||         
TGATATAGAGGTTGTTCGCATGCTATGGGATGTGCTGATGGAGGCTGTTCAGTGGTCTGGGAAGAACCAGCAACAAAATTCTAATTCAGCACTTCGGCAGgtaaatctttttattttggcattgattttaaa-gcagttgtgggatacttggaatgtgt---atatcttagttc----agcttc-tgaaattctacttttgcctactag

upper sequence: GLYMA09G38530.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM5G877316_T02 (Zea mays), 5'ss of exon 6
GGACATTGAGGTGGTGCGGATCTTGTGGGATGTTTTAATGGATGCTGTTCAGTGGTCTGGAAAAAATCAGCAACAGAATGCCAATGCAGCCCTTCGTCAGgtatcctttggatattttgcttgtatgccaaatgcagaccttgtgtacttgaggagttttgaaaattct--tgttttatga-gcttagtcaagttctaggttt
 ||  | |||||  | || || |||||||||||  | ||||| ||||||||||||||||| || || |||||||||||| | |||||||| ||||| |||||| | | | ||  ||||| ||   | ||||   ||     ||   | |  | |  |     ||| ||   ||  |||    ||||  |   |  |       
TGATCTAGAGGTCATTCGCATGTTGTGGGATGTGCTCATGGAGGCTGTTCAGTGGTCTGGGAAGAACCAGCAACAGAATTCTAATGCAGCACTTCGGCAGgtaacgtgttgaagttttggtttgtttccaaggccaagaactggacattgaatgcctaacataaactcgaatgccttacattgcttgttttggcacctta---

upper sequence: GLYMA09G38530.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G012416_T04 (Zea mays), 5'ss of exon 6
GGACATTGAGGTGGTGCGGATCTTGTGGGATGTTTTAATGGATGCTGTTCAGTGGTCTGGAAAAAATCAGCAACAGAATGCCAATGCAGCCCTTCGTCAGgta-tcctttggatattttgcttgtatgccaaatgcagaccttgtgtacttga---ggagttttgaaaattcttgttttatga-gcttagtcaagttctaggttt--
 ||  | |||||  | || || |||||||||||  | ||||| ||||||||||||||||| || || ||||| || ||| |||||||||| ||| | |||||| |  | |  |  ||||||||   |  ||| | ||    ||| |||| | |   | | | |||   ||   ||  |||     |||  |  ||| ||   |||  
TGATTTAGAGGTTATTCGCATGTTGTGGGATGTGCTCATGGAGGCTGTTCAGTGGTCTGGGAAGAACCAGCAGCAAAATTCCAATGCAGCACTTAGGCAGgtagtgttgttaaacttttgctttctttacaagtaca----ttgagtacctaacatgaactcttgttgatgtatgacttacattacttgttttagtact---tttaa

upper sequence: GLYMA09G38530.1 (Glycine max), 5'ss of exon 6
lower sequence: AT5G36230.1 (Arabidopsis thaliana), 5'ss of exon 6
GGACATTGAGGTGGTGCGGATCTTGTGGGATGTTTTAATGGATGCTGTTCAGTGGTCTGGAAAAAATCAGCAACAGAATGCCAATGCAGCCCTTCGTCAGgtatcctttggatattttgcttgtatgccaaatgcagaccttgtgtacttgaggagttttgaaaattct-tgttttatgagcttagtcaagttctaggttt--
 ||||||||||| |||||  |  | ||||||| ||||||||||||||||||||||||||||||||| ||||| || ||||| ||| | |  || || ||||||   |||   |||     |  |  |||||      |  || | |   | | |   | | | | |||  | | |  || | |    ||    ||  |     
TGACATTGAGGTTGTGCGTGTTGTTTGGGATGGTTTAATGGATGCTGTTCAGTGGTCTGGAAAAAACCAGCAGCAAAATGCAAATTCTGTTCTGCGCCAGgtaagattt---tatagatatgatgagccaaccattcaatttatatctgtcatgtcatataagagttccatatgtagtgtgttactccacaaactgcgaaaga

upper sequence: GLYMA09G38530.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv04s0023g00670.t01 (Vitis vinifera), 5'ss of exon 7
GGACATTGAGGTGGTGCGGATCTTGTGGGATGTTTTAATGGATGCTGTTCAGTGGTCTGGAAAAAATCAGCAACAGAATGCCAATGCAGCCCTTCGTCAGgtatcctttggatattttgcttgtatgccaaatgcagaccttgtgtacttgaggagttt-tgaaaattcttgttttatgagcttagtcaagttctaggttt--
 ||||||||||| ||||| ||||||||||||||  |||||||||| |||||||||||||| ||||| ||||| ||||||||||||||||| || || ||||||| |||| | | | ||  || | |      |    |||      | || |    | | |    ||  ||| ||    ||  |  |  ||    || | |  
AGACATTGAGGTTGTGCGAATCTTGTGGGATGTCATAATGGATGCAGTTCAGTGGTCTGGGAAAAACCAGCAGCAGAATGCCAATGCAGCTCTACGCCAGgtatgcttttggtgtattatttctttatt---tctgtaccaaaaacatttaaatgttctatattcatatttgcttgtatagagtgattgagccaaagatattg

upper sequence: GLYMA09G38530.1 (Glycine max), 5'ss of exon 6
lower sequence: EFJ06557 (Selaginella moellendorffii), 5'ss of exon 7
GGACATTGAGGTGGTGCGGATCTTGTGGGATGTTTTAATGGATGCTGTTCAGTGGTCTGGAAAAAATCAGCAACAGAATGCCAATGCAGCCCTTCGTCAGgtatcctttggatattttgcttgtatgccaaatgcagaccttgtgtacttgaggagttttgaaaattcttgttttatgagcttagtcaagttctaggttt
 ||| | || || |||||||   ||||||||| | ||||||||||||| |||||||| || || ||||| || ||||||| ||||   || || || |||||    |||  |  | |  |  ||  |  | | || ||  |   |  |||      |||  ||    |                                
CGACGTGGACGTTGTGCGGACGGTGTGGGATGCTCTAATGGATGCTGTACAGTGGTCAGGCAAGAATCAACAGCAGAATGTCAATCTCGCTCTGCGACAGgttagtttttaagctctctcacgt-cgtaagaagc-gaagtaacgctcttctta--tttctaatgcacag------------------------------

upper sequence: GLYMA09G38530.1 (Glycine max), 5'ss of exon 6
lower sequence: EFJ31357 (Selaginella moellendorffii), 5'ss of exon 7
GGACATTGAGGTGGTGCGGATCTTGTGGGATGTTTTAATGGATGCTGTTCAGTGGTCTGGAAAAAATCAGCAACAGAATGCCAATGCAGCCCTTCGTCAGgtatcctttggatattttgcttgtatgccaaatgcagaccttgtgtacttgaggagttttgaaaattcttgttttatgagcttagtcaagttctaggttt
 ||| | || || |||||||   ||||||||| | ||||||||||||| |||||||| || || ||||| || ||||||| ||||   || || || |||||    |||  |  | |  |  ||  |  | | || ||  |   |  |||      |||  ||    |                                
CGACGTGGACGTTGTGCGGACGGTGTGGGATGCTCTAATGGATGCTGTACAGTGGTCAGGCAAGAATCAACAGCAGAATGTCAATCTCGCTCTGCGACAGgttagtttttaagttctctcacgt-cgtaagaagc-gaagtaacgctcttctta--tttctaatgcacag------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151400958|gb|EV270772.1|EV270772
EST:     AGTGGTCTGGAAAAAATCAGCAACAGAATGCCAATGCAGCCCTTCGTCAG                         -TAAAAACTTGGGCAGAATTGTTGAATACATTCTGCACCACTGGGAAACTT
genomic: AGTGGTCTGGAAAAAATCAGCAACAGAATGCCAATGCAGCCCTTCGTCAGgtatcctttg ... catggtgaagGTAAAAACTTGGGCAGAATTGTTGAATACATTCTGCACCACTGGGAAACTT
EST: gi|7285356|gb|AW597843.1|AW597843
EST:     AGTGGTCTGGAAAAAATCAGCAACAGAATGCCAATGCAGCCCTTCGTCAG                         GTAAAAACTTGGGCAGAATTGTTGAATACATTCTGCACCACTGGGAAACTT
genomic: AGTGGTCTGGAAAAAATCAGCAACAGAATGCCAATGCAGCCCTTCGTCAGgtatcctttg ... catggtgaagGTAAAAACTTGGGCAGAATTGTTGAATACATTCTGCACCACTGGGAAACTT
EST: gi|298189880|gb|HO038283.1|HO038283
EST:     AGTGGTCTGGAAAAAATCAGCAACAGAATGCCAATGCAGCCCTTCGTCAG                         GTAAAAACTTGGGCAGAATTGTTGAATACATTCTGCACCACTGGGAAA
genomic: AGTGGTCTGGAAAAAATCAGCAACAGAATGCCAATGCAGCCCTTCGTCAGgtatcctttg ... catggtgaagGTAAAAACTTGGGCAGAATTGTTGAATACATTCTGCACCACTGGGAAA