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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAGTATCATTGGACATGCTTGGCCGCATATTCAATGGTTCTGGAAAACCAATTGATAATGGTCCACCCATATTACCCGAGGCTTACTTGGACATATCAGgtataaaatttcttctggggaggtatgaatatgtatgtttatctttgccttttttaatatatcccccataattcag

Basic information

species Glycine max
transcript GLYMA09G38110.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G38110.2 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os06g37180.1 (Oryza sativa), 5'ss of exon 6
CCAGTATCATTGGACATGCTTGGCCGCATATTCAATGGTTCTGGAAAACCAATTGATAATGGTCCACCCATATTACCCGAGGCTTACTTGGACATATCAGgtataaaatttct----tctgggga---ggtatgaatatgtatgtttatctttgccttttttaat--atatcccccataattcag----------------------------------------------------
|| || ||| | || |||||||| ||||| || ||||| ||||||||||| ||||||||||| ||||| || || || ||||| |||||||| || || ||||     || ||    || || |    | |||| | ||  ||  |||  |     || ||| ||   ||       |   | |                                                     
CCTGTCTCACTTGATATGCTTGGGCGCATTTTTAATGGATCTGGAAAACCCATTGATAATGGCCCACCTATTTTGCCAGAGGCCTACTTGGATATCTCTGgtaagtttttgctcaattcaggtgcactgctatggaaattcatagttaagtgcatgttcttttatcagtacggatggtggctaaacttatatttctcttctgataatattaataatgtcttccgatgtttattccag

upper sequence: GLYMA09G38110.2 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G094497_T02 (Zea mays), 5'ss of exon 5
CCAGTATCATTGGACATGCTTGGCCGCATATTCAATGGTTCTGGAAAACCAATTGATAATGGTCCACCCATATTACCCGAGGCTTACTTGGACATATCAGgtataaaatttc---ttctggggaggtatg----aatatgtatgtttatct-----ttgccttttttaatatatcccccataattcag------------------------------------------------------------------
|| || ||| | || |||||||| ||||| || ||||||||||||||||| ||||| ||||| || || ||||| ||||| || |||||||| || || ||||   ||||||   |||| |   | |       ||||   ||| |||  |      || | |    | ||  |     |    |  |                                                                  
CCTGTCTCACTTGATATGCTTGGGCGCATTTTTAATGGTTCTGGAAAACCTATTGACAATGGCCCCCCGATATTGCCCGAAGCCTACTTGGATATCTCTGgtaagtaatttctggttctagcatgctgctctacaatactcatggttaagtgcatgctgtcgtgcagagtaggttttagacgtattggttaattgagttaaatcaatgagtccatctttaaattttgtaaatatgtactctgattttgctgcag

upper sequence: GLYMA09G38110.2 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G181151_T02 (Zea mays), 5'ss of exon 6
CCAGTATCATTGGACATGCTTGGCCGCATATTCAATGGTTCTGGAAAACCAATTGATAATGGTCCACCCATATTACCCGAGGCTTACTTGGACATATCAGgtataaaatttcttctggggaggtatgaatatgta-tgtttatctt----tgccttttttaatatatcccccataattcag-----------------------------------------------------------------------------
|| || ||| | || |||||||| ||||| || ||||||||||||||||| ||||| ||||| || || |||||||| || || |||||||| || || ||||   |||||||  |             | |  | || | ||  |    ||| | || |      |      |  |  |                                                                              
CCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGTTCTGGAAAACCTATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTGgtaagtaatttctggttcaagcacgctgctctacaatgctcatggtgaagtgcatgttgtggagagtagtaggttttagaagtattgattgattagcggcattaaatcaatgagtccatctttaaagtttgtaatcatgtactctgattttgttgcag

upper sequence: GLYMA09G38110.2 (Glycine max), 5'ss of exon 6
lower sequence: AT4G38510.5 (Arabidopsis thaliana), 5'ss of exon 7
CCAGTATCATTGGACATGCTTGGCCGCATATTCAATGGTTCTGGAAAACCAATTGATAATGGTCCACCCATATTACCCGAGGCTTACTTGGACATATCAGgtataaaattt---cttctggggaggta-tgaatatgt-atgtttatctttgccttttttaatatatccccca--taattcag
|| || || ||||| |||||||| ||||| ||||||||||| || || || ||||| || |||||||| ||||| || ||||| |||||||| || || |||       ||   | ||| |  |  || | | ||| | ||  | |      |   | | | | ||  |      |  | |||
CCTGTTTCTTTGGATATGCTTGGTCGCATCTTCAATGGTTCAGGGAAGCCCATTGACAACGGTCCACCTATATTGCCTGAGGCGTACTTGGATATTTCTGgtgagctgctttagcctcttgtcacataattactatctcataataaaacacacagatataattctagacttttgtttctccag

upper sequence: GLYMA09G38110.2 (Glycine max), 5'ss of exon 6
lower sequence: Vv03s0038g02760.t01 (Vitis vinifera), 5'ss of exon 6
CCAGTATCATTGGACATGCTTGGCCGCATATTCAATGGTTCTGGAAAACCAATTGATAATGGTCCACCCATATTACCCGAGGCTTACTTGGACATATCAGgtataaaatttcttctggggaggtatgaat-----atgtatgtttatctttgccttttttaatatatccc--ccata-attcag-------------------------
|| || |||||||| |||||||| || || || |||||||| || ||||| ||||||||||| || || ||||| || |||||||||||||| || || |||    | ||| ||  | || ||||| | |     ||  |   | | || ||   |||  | | ||   |      | || | |                         
CCTGTCTCATTGGATATGCTTGGGCGTATCTTTAATGGTTCAGGGAAACCCATTGATAATGGGCCTCCTATATTGCCAGAGGCTTACTTGGATATTTCTGgtg---agttttttaggaggtggtattatttaaccattaaaactcacctctgaactttagagtttacaacagtggcagatcctgtactctttttctttccttttttcag

upper sequence: GLYMA09G38110.2 (Glycine max), 5'ss of exon 6
lower sequence: PP1S425_12V6.1 (Physcomitrella patens), 5'ss of exon 5
CCAGTATCATTGGACATGCTTGGCCGCATATTCAATGGTTCTGGAAAACCAATTGATAATGGTCCACCCATATTACCCGAGGCTTACTTGGACATATCAGgtataaaattt-------cttctggggaggtatgaatatgtatgtttatctttgccttttttaatatatcc-cccataattcag----------------
|| || ||||||||||||||||| || || |||||||||||||| ||||| ||||| || || || |||||  |  | || || ||| | ||||| ||||||      |||       ||| |         | |  || |  |  ||| |||      || || | ||   |  || | |||                 
CCGGTCTCATTGGACATGCTTGGACGTATCTTCAATGGTTCTGGGAAACCCATTGACAACGGCCCTCCCATTCTTGCAGAAGCCTACCTTGACATTTCAGgtgcggtcttttgcttgtcttttccactaacctcagcatcttggaatattttttaaagattgaagagatttgcttattagtcaatttgacatgacctcag

upper sequence: GLYMA09G38110.2 (Glycine max), 5'ss of exon 6
lower sequence: PP1S100_117V6.1 (Physcomitrella patens), 5'ss of exon 6
CCAGTATCATTGGACATGCTTGGCCGCATATTCAATGGTTCTGGAAAACCAATTGATAATGGTCCACCCATATTACCCGAGGCTTACTTGGACATATCAGgtataaaatttcttctggggaggtatgaatatgtatgtttatctttgcctttttt-aatatatccc-ccataattcag------------------------------------
||||| ||  ||||||||||||| || || ||||| || ||||||||||| ||||| || ||||| ||||| ||| | || || ||  | || || ||||||        ||   | || |    | |  ||   |   |  ||      ||||  ||||| |    | || | |                                       
CCAGTGTCGCTGGACATGCTTGGGCGTATCTTCAACGGATCTGGAAAACCTATTGACAACGGTCCTCCCATTTTAGCAGAAGCGTATCTTGATATTTCAGgtgcttgcactcgctttggtacaccttataatcggtaactggctgcaaaattttggaatattttgtgctatgaattgctatattcgttaaacagtctacttgatgtggcttcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209723248|gb|BW675195.1|BW675195
EST:     AATTGATAATGGTCCACCCATATTACCCGAGGCTTACTTGGACATATCAG                         GAAGTTCCATCAACCCTAGTGAGAGAACCTATCCTGAGGAGATGATACAGA
genomic: AATTGATAATGGTCCACCCATATTACCCGAGGCTTACTTGGACATATCAGgtataaaatt ... cataattcagGAAGTTCCATCAACCCTAGTGAGAGAACCTATCCTGAGGAGATGATACAGA
EST: gi|22931741|gb|BU548880.1|BU548880
EST:     AATTGATAATGGTCCACCCATATTACCCGAGGCTTACTTGGACATATCAG                         GAAGTTCCATCAACCCTAGTGAGAGAACCTATCCTGAGGAGATGATACAGA
genomic: AATTGATAATGGTCCACCCATATTACCCGAGGCTTACTTGGACATATCAGgtataaaatt ... cataattcagGAAGTTCCATCAACCCTAGTGAGAGAACCTATCCTGAGGAGATGATACAGA
EST: gi|298183011|gb|HO028274.1|HO028274
EST:     AATTGATAATGGTCCACCCATATTACCCGAGGCTTACTTGGACATATCAG                         GAAGTTCCATCAACCCTAGTGAGAGAACCTATCCTGAGGAGATGATACAGA
genomic: AATTGATAATGGTCCACCCATATTACCCGAGGCTTACTTGGACATATCAGgtataaaatt ... cataattcagGAAGTTCCATCAACCCTAGTGAGAGAACCTATCCTGAGGAGATGATACAGA
EST: gi|14259630|gb|BG882538.1|BG882538
EST:     AATTGATAATGGTCCACCCATATTACCCGAGGCTTACTTGGACATATCAG                         GAAGTTCCATCAACCCTAGTGAGAGAACCTATCCTGAGGAGATGATACAGA
genomic: AATTGATAATGGTCCACCCATATTACCCGAGGCTTACTTGGACATATCAGgtataaaatt ... cataattcagGAAGTTCCATCAACCCTAGTGAGAGAACCTATCCTGAGGAGATGATACAGA
EST: gi|213617416|gb|DB965231.1|DB965231
EST:     AATTGATAATGGTCCACCCATATTACCCGAGGCTTACTTGGACATATCAG                         GAAGTTCCATCAACCCTAGTGAGAGAACCTATCCTGAGGAGATGATACAGA
genomic: AATTGATAATGGTCCACCCATATTACCCGAGGCTTACTTGGACATATCAGgtataaaatt ... cataattcagGAAGTTCCATCAACCCTAGTGAGAGAACCTATCCTGAGGAGATGATACAGA
EST: gi|6567285|gb|AW234896.1|AW234896
EST:     AATTGATAATGGTCCACCCATATTACCCGAGGCTTACTTGGACATATCAT                         GAAGTTCCATCAACCCTAGTGAGAGAACCTATCCTGAGGAGATGATACAGA
genomic: AATTGATAATGGTCCACCCATATTACCCGAGGCTTACTTGGACATATCAGgtataaaatt ... cataattcagGAAGTTCCATCAACCCTAGTGAGAGAACCTATCCTGAGGAGATGATACAGA
EST: gi|5342420|gb|AI794704.1|AI794704
EST:     AATTGATAATGGTCCACCCATATTACCCGAGGCTTACTTGGACATATCAG                         GAAGTTCCATCAACCCTAGTGAGAGAACCTATCCTGAGGAGATGATACAGA
genomic: AATTGATAATGGTCCACCCATATTACCCGAGGCTTACTTGGACATATCAGgtataaaatt ... cataattcagGAAGTTCCATCAACCCTAGTGAGAGAACCTATCCTGAGGAGATGATACAGA
EST: gi|213607123|gb|DB967000.1|DB967000
EST:     AATTGATAATGGTCCACCCATATTACCCGAGGCTTACTTGGACATATCAG                         GAAGTTCCATCAACCCTAGTGAGAGAACCTATCCTGAGGAGATGATACAGA
genomic: AATTGATAATGGTCCACCCATATTACCCGAGGCTTACTTGGACATATCAGgtataaaatt ... cataattcagGAAGTTCCATCAACCCTAGTGAGAGAACCTATCCTGAGGAGATGATACAGA
EST: gi|7589581|gb|AW705352.1|AW705352
EST:     AATTGATAATGGTCCACCCATATTACCCGAGGCTTACTTGGACATATCAG                         GAAGTTCCATCAACCCTAGTGAGAGAACCTATCCTGAGGAGATGATACAGA
genomic: AATTGATAATGGTCCACCCATATTACCCGAGGCTTACTTGGACATATCAGgtataaaatt ... cataattcagGAAGTTCCATCAACCCTAGTGAGAGAACCTATCCTGAGGAGATGATACAGA
EST: gi|213592755|gb|DB957813.1|DB957813
EST:     AATTGATAATGGTCCACCCATATTACCCGAGGCTTACTTGGACATATCAG                         GAAGTTCCATCAACCCTAGTGAGAGAACCTATCCTGAGGAGATGATACAGA
genomic: AATTGATAATGGTCCACCCATATTACCCGAGGCTTACTTGGACATATCAGgtataaaatt ... cataattcagGAAGTTCCATCAACCCTAGTGAGAGAACCTATCCTGAGGAGATGATACAGA
EST: gi|213602215|gb|DB958475.1|DB958475
EST:     AATTGATAATGGTCCACCCATATTACCCGAGGCTTACTTGGACATATCAG                         GAAGTTCCATCAACCCTAGTGAGAGAACCTATCCTGAGGAGATGATACAGA
genomic: AATTGATAATGGTCCACCCATATTACCCGAGGCTTACTTGGACATATCAGgtataaaatt ... cataattcagGAAGTTCCATCAACCCTAGTGAGAGAACCTATCCTGAGGAGATGATACAGA