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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGCCTTGGCATCATGGGTGGCAAACCAGGTGCTTCAACATACATTATTGGTGCTCAGAATGAAAAAGCATTCTACCTTGATCCCCATGATGTTCAGCAGgtatgagagtatacaaaattattatttattactcatctcaatacttttgagattgtgaaacttgcatcatatttgttatatatgaattaacttattgaat...

Basic information

species Glycine max
transcript GLYMA09G38000.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G38000.1 (Glycine max), 5'ss of exon 6
lower sequence: AT2G44140.2 (Arabidopsis thaliana), 5'ss of exon 6
AAGCCTTGGCATCATGGGTGGCAAACCAGGTGCTTCAACATACATTATTGGTGCTCAGAATGAAAAAGCATTCTACCTTGATCCCCATGATGTTCAGCAGgtatgagagtatacaaaattattatttattactcatctcaatact--tttgagattgtgaaacttgcatcatatttgttatatatgaattaacttattgaat-----------------------------------------------
 ||| | || ||  ||||||||||||||||||| ||||| |||||  |||||| |||  | || ||||  |||||||||||||| ||||| ||||| ||||| | |     | |      ||| |||   | ||   | |||  |  | ||  ||||||    |  |||  ||  |       || |  |  | | |   ||                                               
GAGCGTGGGGATTTTGGGTGGCAAACCAGGTGCCTCAACTTACATAGTTGGTGTTCAAGAAGACAAAGGTTTCTACCTTGATCCGCATGAAGTTCAACAGgtttcatttcgtgcctctgaatttttttagagtc-cataaatcttggtctggcattgtggtggtc-catagtacctaagtcggataagatgccatttcacatgataagtcggatactgattgagacttatcgtttgatgattgatttag

upper sequence: GLYMA09G38000.1 (Glycine max), 5'ss of exon 6
lower sequence: AT3G59950.1 (Arabidopsis thaliana), 5'ss of exon 6
AAGCCTTGGCATCATGGGTGGCAAACCAGGTGCTTCAACATACATTATTGGTGCTCAGAATGAAAAAGCATTCTACCTTGATCCCCATGATGTTCAGCAGgtatga--gagtatacaaaattattatttattactcatctcaatacttttgagattgtgaaacttgcatcatatttgttatatatgaattaacttattgaat-
|||||| |||||  |||| |||||||||||||| ||||| |||||  |||| | |||  | || ||||  |||||||||||||| ||||||||||| ||||| |    ||  |  |   || | | ||||||  |    |||| |||      |||||    |    |  | | ||   |  |  ||  | |  | |   |  
AAGCCTCGGCATTTTGGGCGGCAAACCAGGTGCATCAACTTACATAGTTGGAGTTCAAGAAGACAAAGGTTTCTACCTTGATCCGCATGATGTTCAACAGgttttcttgatcactccttataaatctttatt-ttagaatcaa-actagaattattgtagttccaagaaaaaacttaacactt-cgatctgaagtttgagaca

upper sequence: GLYMA09G38000.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv00s0215g00030.t01 (Vitis vinifera), 5'ss of exon 7
AAGCCTTGGCATCATGGGTGGCAAACCAGGTGCTTCAACATACATTATTGGTGCTCAGAATGAAAAAGCATTCTACCTTGATCCCCATGATGTTCAGCAGgtatgagagtatacaaa--attattatttat-tactcatctcaatacttttgagattgtgaaacttgcatcatatttgttatatatgaattaacttattgaat
 |||||||||||| |||| || ||||| |||||||| || |||||| ||||||  ||  ||||||||||||| ||||| || || ||||| |  |||  |||||   |  || | ||  | |  | |  || || |||   | ||||  || |||  || | |  | |||    ||||  |   ||   ||     | |    
GAGCCTTGGCATCTTGGGCGGGAAACCTGGTGCTTCCACTTACATTGTTGGTGTGCAAGATGAAAAAGCATTTTACCTCGACCCGCATGAAGCCCAGTCGgtatagcacaattctaataacttctttccatctagtcactaccatacaatttagaaggttatatctacataggttttgaaaggcatacttttgtcaagtt---

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151406562|gb|EV276377.1|EV276377
EST:     GTGCTCAGAATGAAAAAGCATTCTACCTTGATCCCCATGATGTTCAGCAG                         GTTGTTAATATCAGTGGGGATACTCAAGAGCCTACTAGTACTTC
genomic: GTGCTCAGAATGAAAAAGCATTCTACCTTGATCCCCATGATGTTCAGCAGgtatgagagt ... tggttttcagGTTGTTAATATCAGTGGGGATACTCAAGAGCCTACTAGTACTTC