1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TCTGGAGGAGCAGTTGGAGTAATCTCGGCATTAATGGTGGTTGAGATAAACAATGTAAAACAGCAGGAGCAGAAAAGATGCAAATACTGTCTTGGCACTGgtaagatttcaaaacctcatctgttatctgcattttaggagtcaaacatcttaatgtggaactgaaggattttgtcattcttcttcccttatcaaccttc...
species | Glycine max |
transcript | GLYMA09G36770.3 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CAATGTAAAACAGCAGGAGCAGAAAAGATGCAAATACTGTCTTGGCACTG GATATCTTGCATGTGCTCGCTGTTCAAGCACAGGAGCACTTGTTCTGATTGEST: gi|254342696|gb|GR858858.1|GR858858
genomic: CAATGTAAAACAGCAGGAGCAGAAAAGATGCAAATACTGTCTTGGCACTGgtaagatttc ... ttgctgtcagGATATCTTGCATGTGCTCGCTGTTCAAGCACAGGAGCACTTGTTCTGATTG
EST: CAATGTAAAACAGCAGGAGCAGAAAAGATGCAAATACTGTCTTGGCACTG GATATCTTGCATGTGCTCGCTGTTCAAGCACAGGAGCACTTGTTCTGATTGEST: gi|6846776|gb|AW349066.1|AW349066
genomic: CAATGTAAAACAGCAGGAGCAGAAAAGATGCAAATACTGTCTTGGCACTGgtaagatttc ... ttgctgtcagGATATCTTGCATGTGCTCGCTGTTCAAGCACAGGAGCACTTGTTCTGATTG
EST: CAATGTAAAACAGCAGGAGCAGAAAAGATGCAAATACTGTCTTGGCACTG GATATCTTGCATGTGCTCGCTGTTCAAGCACAGGAGCACTTGTTCTGATTGEST: gi|120490996|gb|EH219163.1|EH219163
genomic: CAATGTAAAACAGCAGGAGCAGAAAAGATGCAAATACTGTCTTGGCACTGgtaagatttc ... ttgctgtcagGATATCTTGCATGTGCTCGCTGTTCAAGCACAGGAGCACTTGTTCTGATTG
EST: CAATGTAAAACAGCAGGAGCAGAAAAGATGCAAATACTGTCTTGGCACTG GATATCTTGCATGTGCTCGCTGTTCAAGCACAGGAGCACTTGTTCTGATTGEST: gi|31474915|gb|CD416943.1|CD416943
genomic: CAATGTAAAACAGCAGGAGCAGAAAAGATGCAAATACTGTCTTGGCACTGgtaagatttc ... ttgctgtcagGATATCTTGCATGTGCTCGCTGTTCAAGCACAGGAGCACTTGTTCTGATTG
EST: CAATGTAAAACAGCAGGAGCAGAAAAGATGCAAATACTGTCTTGGCACTG GATATCTTGCATGTGCTCGCTGTTCAAGCACAGGAGCACTTGTTCTGATTGEST: gi|254342695|gb|GR858857.1|GR858857
genomic: CAATGTAAAACAGCAGGAGCAGAAAAGATGCAAATACTGTCTTGGCACTGgtaagatttc ... ttgctgtcagGATATCTTGCATGTGCTCGCTGTTCAAGCACAGGAGCACTTGTTCTGATTG
EST: CAATGTAAAACAGCAG-AGCAGAAAAGATGCAAATACTGTCTTGGCACTG GATATCTTGCATGTGCTCGCTGTTCAAGCACAGGAGCACTTGTTCTGATTGEST: gi|31469669|gb|CD411697.1|CD411697
genomic: CAATGTAAAACAGCAGGAGCAGAAAAGATGCAAATACTGTCTTGGCACTGgtaagatttc ... ttgctgtcagGATATCTTGCATGTGCTCGCTGTTCAAGCACAGGAGCACTTGTTCTGATTG
EST: CAATGTAAAACAGCAGGAGCAGAAAAGATGCAAATACTGTCTTGGCACTG GATATCTTGCATGTGCTCGCTGTTCAAGCACAGGAGCACTTGTTCTGATTGEST: gi|21285677|gb|BQ473548.1|BQ473548
genomic: CAATGTAAAACAGCAGGAGCAGAAAAGATGCAAATACTGTCTTGGCACTGgtaagatttc ... ttgctgtcagGATATCTTGCATGTGCTCGCTGTTCAAGCACAGGAGCACTTGTTCTGATTG
EST: CAATGTAAAACAGCAGGAGCAGAAAAGATGCAAATACTGTCTTGGCACTG GATATCTTGCATGTGCTCGCTGTTCAAGCACAGGAGCACTTGTTCTGATTGEST: gi|15336929|gb|BI497585.1|BI497585
genomic: CAATGTAAAACAGCAGGAGCAGAAAAGATGCAAATACTGTCTTGGCACTGgtaagatttc ... ttgctgtcagGATATCTTGCATGTGCTCGCTGTTCAAGCACAGGAGCACTTGTTCTGATTG
EST: CAATGTAAAACAGCAGGAGCAGAAAAGATGCAAATACTGTCTTGGCACTG GATATCTTGCATGTGCTCGCTGTTCAAGCACAG
genomic: CAATGTAAAACAGCAGGAGCAGAAAAGATGCAAATACTGTCTTGGCACTGgtaagatttc ... ttgctgtcagGATATCTTGCATGTGCTCGCTGTTCAAGCACAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTGGAGGAGCAGTTGGAGTAATCTCGGCATTAATGGTGGTTGAGATAAACAATGTAAAACAGCAGGAGCAGAAAAGATGCAAATACTGTCTTGGCACTGgtaagatttcaaaacctcatctgttatctgcattttaggagtcaaacatcttaatgtggaactgaaggattttgtcattcttcttcccttatcaaccttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttcttccc