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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTTAATTCTCTTGAAGAGTGTACAAAAGACATTAAAGGAGCTAAAGTTGAGAACAATAAATTTTGTGTATCTGTGCACTACCGGAATGTAGATGAAAAGgttataggcttttgtacttataattttctgctatcttgattttcctttttctgaactttttacccatgctatgttcttaaatatttttcttttcaatttaataatacag

Basic information

species Glycine max
transcript GLYMA09G36570.2
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58024090|gb|CX710831.1|CX710831
EST:     AGAACAATAAATTTTGTGTATCTGTGCACTACCGGAATGTAGATGAAAAG                         TATTGGAATTGGGTGGGGCAACGTGTTCATGATGTTCTGAAGGGCTATCCA
genomic: AGAACAATAAATTTTGTGTATCTGTGCACTACCGGAATGTAGATGAAAAGgttataggct ... aataatacagTATTGGAATTGGGTGGGGCAACGTGTTCATGATGTTCTGAAGGGCTATCCA
EST: gi|6566157|gb|AW233794.1|AW233794
EST:     AGAACAATAAATTTTGTGTATCTGTGCACTACCGGAATGTAGATGAAAAG                         TATTGGAATTGGGTGGGGCAACGTGTTCATGATGTTCTGAAGGGCTATCCA
genomic: AGAACAATAAATTTTGTGTATCTGTGCACTACCGGAATGTAGATGAAAAGgttataggct ... aataatacagTATTGGAATTGGGTGGGGCAACGTGTTCATGATGTTCTGAAGGGCTATCCA
EST: gi|193653391|gb|FK594769.1|FK594769
EST:     AACAAATAAATTTTAGTGTATCTGTGCACTACCGGAATGTAGATGAAAAG                         TATTGGAATTGGGTGGGGCAACGTGTTCATGATGTTCTGAAGGGCTATCCA
genomic: AAC-AATAAATTTT-GTGTATCTGTGCACTACCGGAATGTAGATGAAAAGgttataggct ... aataatacagTATTGGAATTGGGTGGGGCAACGTGTTCATGATGTTCTGAAGGGCTATCCA