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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATGATAAATATTATCAAACACCACGAGTATGGCTTACTGGGTATGATGAGgtttgttttattctcttgatccttgtaactataatttagtcacttttgactagtctatattgggctatagcagagctactagaactagaattagcatttc...

Basic information

species Glycine max
transcript GLYMA09G36540.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G36540.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os10g41110.1 (Oryza sativa), 5'ss of exon 6
GTATGATAAATATTATCAAACACCACGAGTATGGCTTACTGGGTATGATGAGgt---ttgttttattctcttgatc--cttgtaactataatttagtcacttttgactagtctatattgg--gctatagcagagctactagaactagaattagcatttc
 |||||||||||||| ||||| ||||| || |||||||| || |||||||||||   |  ||||   ||    |    |||||  |  |  |  ||      |||| |  | ||  |||   | | | ||||                           
ATATGATAAATATTACCAAACCCCACGTGTCTGGCTTACCGGATATGATGAGgtaagtcattttgcccttagaagtgtcttgttgcagtcttgaagatgaagttgattcatttaatttgattgttgttgcag---------------------------

upper sequence: GLYMA09G36540.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os01g10290.2 (Oryza sativa), 5'ss of exon 6
GTATGATAAATATTATCAAACACCACGAGTATGGCTTACTGGGTATGATGAGgtttgttttattctctt-----gatccttgtaactataatttagtcacttttgactagtctatattgg--gctatagcagagctactagaactagaattagcatttc
 ||||| |||||||| ||||| ||||| || |||||||| || |||||||||||  ||  | ||  | |     |   |||||  |  |  |  ||      |||| |  | ||  ||    | | | ||||                           
ATATGACAAATATTACCAAACCCCACGTGTCTGGCTTACCGGATATGATGAGgtaagtcattttgccattagaagtgtcttgttgcagtcctgaagatgaagttgattcatttaattttattgttgttgcag---------------------------