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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCTCCACTGGAAGCCCAATTCCTTCCCCCACTCACTCTCCTAACATGTTCAACCAAAATATTGTTCCTTCTTTTCACATCAATTCAGAATCCCCAAAGGgtatctctctctcacatttttaaatgctgctgcttcttcgattgaacttggtataatgtaatttattggtttttacttatgctatttcattccag

Basic information

species Glycine max
transcript GLYMA09G35980.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15815311|gb|BI787586.1|BI787586
EST:     CAACCAAAATATTGTTCCTTCTTTTCACATCAATTCAGAATCCCCAAAGG                         AGAGTGGTTCAACTTCTGCTCCAGCTAGTACTGCATCAGTTTCTGCTGGTC
genomic: CAACCAAAATATTGTTCCTTCTTTTCACATCAATTCAGAATCCCCAAAGGgtatctctct ... ttcattccagAGAGTGGTTCAACTTCTGCTCCAGCTAGTACTGCATCAGTTTCTGCTGGTC
EST: gi|24206180|gb|BU965433.1|BU965433
EST:     TTCTTTTCACATCAATTCAGAATCCCCAAAGG                         AGAGTGGTTCAACTTCTGCTCCAGCTAGTACTGCATCAGTTTCTGCTGGTC
genomic: TTCTTTTCACATCAATTCAGAATCCCCAAAGGgtatctctct ... ttcattccagAGAGTGGTTCAACTTCTGCTCCAGCTAGTACTGCATCAGTTTCTGCTGGTC
EST: gi|193692442|gb|FK627617.1|FK627617
EST:     CCTTCTTTTCACATCAATTCAGAATCCCCAAAGG                         AGAGTGGTTCAACTTCTGCTCCAGCTAGTACTGCATCAGTTTCTGCTGGTC
genomic: CCTTCTTTTCACATCAATTCAGAATCCCCAAAGGgtatctctct ... ttcattccagAGAGTGGTTCAACTTCTGCTCCAGCTAGTACTGCATCAGTTTCTGCTGGTC
EST: gi|7693469|gb|AW761561.1|AW761561
EST:     CAACCAAAATATTGTTCCTTCTTTTCACATCAATTCAGAATCCCCAAAGG                         AGAGTGGTTCAACTTCTGCTCCAGCTAGTACTGCATCAGTTTCTGCTGGTC
genomic: CAACCAAAATATTGTTCCTTCTTTTCACATCAATTCAGAATCCCCAAAGGgtatctctct ... ttcattccagAGAGTGGTTCAACTTCTGCTCCAGCTAGTACTGCATCAGTTTCTGCTGGTC
EST: gi|13788001|gb|BG650593.1|BG650593
EST:     CAACCAAAATATTGTTCCTTCTTTTCACATCAATTCAGAATCCCCAAAGG                         AGAGTGGTTCAACTTCTGCTCCAGCTAGTACTGCATCAGTTTCTGCTGGTC
genomic: CAACCAAAATATTGTTCCTTCTTTTCACATCAATTCAGAATCCCCAAAGGgtatctctct ... ttcattccagAGAGTGGTTCAACTTCTGCTCCAGCTAGTACTGCATCAGTTTCTGCTGGTC
EST: gi|13787910|gb|BG650502.1|BG650502
EST:     CAACCAAAATATTGTTCCTTCTTTTCACATCAATTCAGAATCCCCAAAGG                         AGAGTGGTTCAACTTCTGCTCCAGCTAGTACTGCATCAGTTT
genomic: CAACCAAAATATTGTTCCTTCTTTTCACATCAATTCAGAATCCCCAAAGGgtatctctct ... ttcattccagAGAGTGGTTCAACTTCTGCTCCAGCTAGTACTGCATCAGTTT
EST: gi|193619469|gb|FK571337.1|FK571337
EST:     CTTTTCTACATCAATTCAGAATCCCCAAAGG                         AGAGTGGTTCAACTTCTGCTCCAGCTGGTACTGCATCAGTTTCTGCTGGTC
genomic: CTTTTC-ACATCAATTCAGAATCCCCAAAGGgtatctctct ... ttcattccagAGAGTGGTTCAACTTCTGCTCCAGCTAGTACTGCATCAGTTTCTGCTGGTC
EST: gi|207798278|gb|GD771600.1|GD771600
EST:     CAATTCAGAATCCCCAAAGG                         AGAGTGGTTCAACTTCTGCTCCAGCTAGTACTGCATCAGTTTCTGCTGGTC
genomic: CAATTCAGAATCCCCAAAGGgtatctctct ... ttcattccagAGAGTGGTTCAACTTCTGCTCCAGCTAGTACTGCATCAGTTTCTGCTGGTC
EST: gi|308098408|gb|HO760149.1|HO760149
EST:     CAACCAAAATATTGTTCCTTCTTTTCACATCAATTCAGAATCCCCAAAGG                         AGAGTGGTTCAACTTCTGCTCCAGCTAGT
genomic: CAACCAAAATATTGTTCCTTCTTTTCACATCAATTCAGAATCCCCAAAGGgtatctctct ... ttcattccagAGAGTGGTTCAACTTCTGCTCCAGCTAGT