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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGACTAAGTTGCACTTCAGAGGAGGTAGGATTTTCAATGCTGTCATGGAGGATTTACTAGCAAAAGGAATGAAAAATGCTCGAAATgtaagagaggttgatgatttgccactcttttcttcctctttattgatttttttcattcactcaccagaacttgtaactacag

Basic information

species Glycine max
transcript GLYMA09G35050.4
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18733683|gb|BM527753.1|BM527753
EST:     ATGCTGTCATGGAGGATTTACTAGCAAAAGGAATGAAAAATGCTCGAAAT                         GCTATTATCTCGGGATGTTCAGCTGGAGGATT
genomic: ATGCTGTCATGGAGGATTTACTAGCAAAAGGAATGAAAAATGCTCGAAATgtaagagagg ... gtaactacagGCTATTATCTCGGGATGTTCAGCTGGAGGATT
EST: gi|21888360|gb|BQ741573.1|BQ741573
EST:     ATGCTGTCATGGAGGATTTACTAGCAAAAGGAATGAAAAATGCTCGAAAT                         GCTATTATCTCGGGATGTTCAGCTGGAGGATTA
genomic: ATGCTGTCATGGAGGATTTACTAGCAAAAGGAATGAAAAATGCTCGAAATgtaagagagg ... gtaactacagGCTATTATCTCGGGATGTTCAGCTGGAGGATTA
EST: gi|9986444|gb|BE660552.1|BE660552
EST:     ATGCTGTCATGGAGGATTTACTAGCAAAAGGAATGAAAAATGCTCGAAAT                         GCTATTATCTCGGGATGTTCAGCTGGAGGATTAACATCANTACTGCATTGG
genomic: ATGCTGTCATGGAGGATTTACTAGCAAAAGGAATGAAAAATGCTCGAAATgtaagagagg ... gtaactacagGCTATTATCTCGGGATGTTCAGCTGGAGGATTAACATCAGTACTGCATTGT
EST: gi|9898765|gb|BE607733.1|BE607733
EST:     ATGCTGTCATGGAGGATTTACTAGCAAAAGGAATGAAAAATGCTCGAAAT                         GCTATTATCTCGGGATGTTCAGCTGGAGGATTAACATCAGTACTGCATTGT
genomic: ATGCTGTCATGGAGGATTTACTAGCAAAAGGAATGAAAAATGCTCGAAATgtaagagagg ... gtaactacagGCTATTATCTCGGGATGTTCAGCTGGAGGATTAACATCAGTACTGCATTGT
EST: gi|37995321|gb|CF806910.1|CF806910
EST:     ATGCTGTCATGGAGGATTTACTAGCAAAAGGAATGAAAAATGCTCGAAAT                         GCTATTATCTCGGGATGTTCAGCTGGAGGATTAACATCAGTACTGCATTGT
genomic: ATGCTGTCATGGAGGATTTACTAGCAAAAGGAATGAAAAATGCTCGAAATgtaagagagg ... gtaactacagGCTATTATCTCGGGATGTTCAGCTGGAGGATTAACATCAGTACTGCATTGT
EST: gi|9820186|gb|BE555696.1|BE555696
EST:     ATGCTGTCATGGAGGATTTACTAGCAAAAGGAATGAAAAATGCTCGAAAT                         GCTATTATCTCGGGATGTTCAGCTGGAGGATTAACATCAGTACTGCATTGT
genomic: ATGCTGTCATGGAGGATTTACTAGCAAAAGGAATGAAAAATGCTCGAAATgtaagagagg ... gtaactacagGCTATTATCTCGGGATGTTCAGCTGGAGGATTAACATCAGTACTGCATTGT
EST: gi|15287443|gb|BI471334.1|BI471334
EST:     ATGCTGTCATGGAGGATTTACTAGCAAAAGGAATGAAAAATGCTCGAAAT                         GCTATTATCTCGGGATGTTCAGCTGGAGGATTAACATCAGTACTGCATTGT
genomic: ATGCTGTCATGGAGGATTTACTAGCAAAAGGAATGAAAAATGCTCGAAATgtaagagagg ... gtaactacagGCTATTATCTCGGGATGTTCAGCTGGAGGATTAACATCAGTACTGCATTGT
EST: gi|15664114|gb|BI701485.1|BI701485
EST:     TGCTGTCATGGAGGATTTACTAGCAAAAAGGATTGAANA-TGCTCGAAAT                         GCTATTATTCTCGG-ATGGTCAGCTGGA
genomic: TGCTGTCATGGAGGATTTACTAGCAAAA-GGAATGAAAAATGCTCGAAATgtaagagagg ... gtaactacagGCTATTAT-CTCGGGATGTTCAGCTGGA
EST: gi|33389751|gb|CA852958.1|CA852958
EST:     ATGCTGTCATGGAGGATTTACTAGCAAAAGGAATGAAAAATGCTCGAAAT                         GCTATTATCTCGGGATGTTCAGCTGGAGGATTAACATCAGTACTGCATTGT
genomic: ATGCTGTCATGGAGGATTTACTAGCAAAAGGAATGAAAAATGCTCGAAATgtaagagagg ... gtaactacagGCTATTATCTCGGGATGTTCAGCTGGAGGATTAACATCAGTACTGCATTGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTGACTAAGTTGCACTTCAGAGGAGGTAGGATTTTCAATGCTGTCATGGAGGATTTACTAGCAAAAGGAATGAAAAATGCTCGAAATgtaagagaggttgatgatttgccactcttttcttcctctttattgatttttttcattcactcaccagaacttgtaactacag

- - - - - - - - - - - - - - - - - -  ATGCTG
- - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - -  GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA