1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CTCTGAGCCACTACGGGCACAGATAACAGGAGCTCCTTTGGAGGATGCACGCCACCTCACTCGCCGCTATGACAAACTTCATCAAGAGGTAGAAGCCCAGgtaatgattttctcccacaatggcatgcatatggtggtatgctttgcatggtattcatcatagatatcttctcatcag
species | Glycine max |
transcript | GLYMA09G34950.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GCCACCTCACTCGCCGCTATGACAAACTTCATCAAGAGGTAGAAGCCCAG GCTGCTGAAGTTTTGAGGCGTCGATCAAAGTTGAGGAATTCTTCTGTTTCTEST: gi|209713197|gb|BW681732.1|BW681732
genomic: GCCACCTCACTCGCCGCTATGACAAACTTCATCAAGAGGTAGAAGCCCAGgtaatgattt ... ttctcatcagGCTGCTGAAGTTTTGAGGCGTCGATCAAAGTTGAGGAATTCTTCTGTTTCT
EST: GCCACCTCACTCGCCGCTATGACAAACTTCATCAAGAGGTAGAAGCCCAG GCTGCTGAAAGTTT-GNAG-CGTCGATCAAAGTTGAGGAATTCTTCTGTTTEST: gi|151395193|gb|EV265064.1|EV265064
genomic: GCCACCTCACTCGCCGCTATGACAAACTTCATCAAGAGGTAGAAGCCCAGgtaatgattt ... ttctcatcagGCTGCTGAA-GTTTTG-AGGCGTCGATCAAAGTTGAGGAATTCTTCTGTTT
EST: GCCACCTCACTCGCCGCTATGACAAACTTCATCAAGAGGTAGAAGCCCAG GCTGCTGAAGTTTTGAGGCGTCGATCAAAGTTGAGGAATTCTTCTGTTTCTEST: gi|13479404|gb|BG508747.1|BG508747
genomic: GCCACCTCACTCGCCGCTATGACAAACTTCATCAAGAGGTAGAAGCCCAGgtaatgattt ... ttctcatcagGCTGCTGAAGTTTTGAGGCGTCGATCAAAGTTGAGGAATTCTTCTGTTTCT
EST: GCCACCTCACTCGCCGCTATGACAAACTTCATCAAGAGGTAGAAGCCCAG GCTGCTGAAGTTTTGAGGCGTCGATCAAAGTTGAGGAATTCTTCTGTTTCT
genomic: GCCACCTCACTCGCCGCTATGACAAACTTCATCAAGAGGTAGAAGCCCAGgtaatgattt ... ttctcatcagGCTGCTGAAGTTTTGAGGCGTCGATCAAAGTTGAGGAATTCTTCTGTTTCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCTGAGCCACTACGGGCACAGATAACAGGAGCTCCTTTGGAGGATGCACGCCACCTCACTCGCCGCTATGACAAACTTCATCAAGAGGTAGAAGCCCAGgtaatgattttctcccacaatggcatgcatatggtggtatgctttgcatggtattcatcatagatatcttctcatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC