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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTACTCAGAGGGTCCAAAATGATCTGATAGAGATGTTGCATATTCCTAGATGTGTCAAATTCGTCAGCACTGTCAATAGGCCAAACTTGTTTTATATGgtatatttgtaattaatatctattaacagaattttttactttttatattgatgctcccccctcctccaaggaagttatacccttggctttaatgacaagtttaaaggaattgcataatttcgtattttatactgcag

Basic information

species Glycine max
transcript GLYMA09G34860.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G34860.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os11g48090.3 (Oryza sativa), 5'ss of exon 7
TGCTACTCAGAGGGTCCAAAATGATCTGATAGAGATGTTGCATATTCCTAGATGTGTCAAATTCGTCAGCACTGTCAATAGGCCAAACTTGTTTTATATGgtatatttgtaattaatatctattaacagaattttttactttttatattgatgctcccccctcctccaaggaagttatacccttggctttaatgacaagtttaaaggaattgcataatttcgtattttatactgcag
||| ||  | |  || |||| |||| ||||||||||| | ||||| |||||||||||||| || ||||||||  | || ||||| ||| | || ||||  ||||   | |  | ||| || | |    |||  |    |  |  |||     | |    ||   | ||| |||    ||||      |||   |  ||||   ||  |||                           
TGCGACAAATAAAGTGCAAATTGATTTGATAGAGATGCTTCATATCCCTAGATGTGTCAAGTTTGTCAGCACAATTAACAGGCCCAACCTTTTCTATAAAgtatgccttttctcaatttcaaatcgaggaaaat----ccatccataccacagattttgccaaattcaaagaa----taccacaaaattt---gggaagtgccaattaata--------------------------

upper sequence: GLYMA09G34860.1 (Glycine max), 5'ss of exon 6
lower sequence: AT1G31360.1 (Arabidopsis thaliana), 5'ss of exon 6
TGCTACTCAGAGGGTCCAAAATGATCTGATAGAGATGTTGCATATTCCTAGATGTGTCAAATTCGTCAGCACTGTCAATAGGCCAAACTTGTTTTATATGgtatatttgtaattaatatctattaacagaattttttactttttatattgatgctcccccctcctccaaggaagttatacccttggctttaatgacaagtttaaaggaattgcataatttcgtattttatactgcag
|||||| ||||  || ||||||||||||||||||||| |||||||||||| ||| |||||||| || |||| ||| || ||||||||  | |||||   ||||   ||   | ||||   | |||  || ||  ||| ||  |  | | ||   |       | |  |    |   |     ||| |||  |                                             
TGCTACACAGAAAGTTCAAAATGATCTGATAGAGATGCTGCATATTCCTAAATGCGTCAAATTTGTGAGCAGTGTTAACAGGCCAAATCTCTTTTACTCGgtacgctt--tagtaatgatttttattagtatacttttctcatgctgtagacagtttgtaggcttgaacatgaaccagtaaattgtcttgcag--------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16276851|gb|BI942077.1|BI942077
EST:     GATGTGTCAAATTCGTCAGCACTGTCAATAGGCCAAACTTGTTTTATATG                         GTAAAGGAAAAGTCATCCGTTGGGAAGGTAGTCATTGATGAAATTGCAGAA
genomic: GATGTGTCAAATTCGTCAGCACTGTCAATAGGCCAAACTTGTTTTATATGgtatatttgt ... tatactgcagGTAAAGGAAAAGTCATCCGTTGGGAAGGTAGTCATTGATGAAATTGCAGAA