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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCGTCAAATGGTTATGTTCAGTGCTACATGGCCTTTGCCAGTTCATTACTTGGCACAGGAGTTTATGGATCCTAATCCTGTAAAAgtctgtatcttcattttcaacaaaagctttcaactattatttttatataagcttttagaggaagaaatatttaaactcgtgacag

Basic information

species Glycine max
transcript GLYMA09G34390.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G34390.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os07g20580.1 (Oryza sativa), 5'ss of exon 6
ATCGTCAAATGGTTATGTTCAGTGCTACATGGCCTTTGCCAGTTCATTACTTGGCACAGGAGTTTATGGATCCTAATCCTGTAAAAgtct-gtatcttcattttcaac-------aaaagctttcaactattatttttatataagcttttagaggaagaaatatttaaactcgtgacag
  ||||| | |||||||||||||||||||||||||    | || ||  |  | || || |||||||||||||| |||||  |||| || | || |||   || | | |       || | ||     ||| |    | ||     | ||  |   | |   |||   | || ||   ||
TACGTCAGACGGTTATGTTCAGTGCTACATGGCCTCCTGCTGTCCACCAGCTAGCCCAAGAGTTTATGGATCCAAATCCAATAAAGgtatagtttctcttttcttatctcttgttaatatctgattgctaatgcggtaatgctgaccttccgt--atgtggtatgccaccttgttgtag

upper sequence: GLYMA09G34390.1 (Glycine max), 5'ss of exon 6
lower sequence: AT1G31970.1 (Arabidopsis thaliana), 5'ss of exon 6
ATCGTCAAATGGTTATGTTCAGTGCTACATGGCCTTTGCCAGTTCATTACTTGGCACAGGAGTTTATGGATCCTAATCCTGTAAAAgtctgtatcttcattttcaacaaaagctttcaactattatttttatataagcttttagaggaagaaatatttaaactcgtgacag
 |||||||||||||||||||||||| || |||||||||   |||||  | ||||| ||||| || |||||||| |||||  | || ||||||   ||| |  |||        || |     |     ||   |||  |||  || ||      ||| ||| |  |  |||
TTCGTCAAATGGTTATGTTCAGTGCAACTTGGCCTTTGGATGTTCACAAATTGGCCCAGGAATTCATGGATCCAAATCCAATCAAGgtctgt--tttcctcctcagtttgtctttcctcacctgcaagttgcttaaaatttccgatgat----cattcaaatttctttcag