Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGGCCTTCGGAAGATCGAACTATTCCCTTGAGTGTAATTGCAGAGCGCACAAAACTTTCTATAGAGAATGTGGAGCATCTCCTTATGAAAAGCCTATCTgtaagttctaggaaaaaaacaatgtaaaaagtacatttgattttctaacgcaatcatctaaagtagtagacttccaacctgtggatttgagtaatcatcg...

Basic information

species Glycine max
transcript GLYMA09G34310.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G34310.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv02s0012g02660.t01 (Vitis vinifera), 5'ss of exon 5
TCGGCCTTCGGAAGATCGAACTATTCCCTTGAGTGTAATTGCAGAGCGCACAAAACTTTCTATAGAGAATGTGGAGCATCTCCTTATGAAAAGCCTATCTgtaagttctaggaa---aaaaacaatgtaaaaagtacatttgattttctaacgcaatcatcta--aagtagtagacttccaac-ctgtggatttgagtaatcatcg
 || ||||| |||||||| |||||||||||||   | |||||||| ||||| ||||||||| | ||| |||||||| |||| || ||||| ||||| ||||||||| || |       |||    | | |  |  |  ||| |  |||       | ||||||  |  |  |   |||||    ||   ||| ||   | |     
CCGTCCTTCAGAAGATCGTACTATTCCCTTGAACATCATTGCAGAACGCACCAAACTTTCTGTGGAGGATGTGGAGTATCTTCTCATGAAGAGCCTTTCTgtaagtccttgatttctgaaatttgtattagtaaaatgtttaaaattc-gttttgagcatctattacctgatcagcttccttttcttcagatctggacact-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19452862|gb|BM954272.1|BM954272
EST:     TAGAGAATGTGGAGCATCTCCTTATGAAAAGCCTATCT                         GTTCATCTAATTGAGGGTATAATTGATCAAGTTGAGGGCACAGTGCATGTT
genomic: TAGAGAATGTGGAGCATCTCCTTATGAAAAGCCTATCTgtaagttcta ... tttattacagGTTCATCTAATTGAGGGTATAATTGATCAAGTTGAGGGCACAGTGCATGTT
EST: gi|254314835|gb|GR829828.1|GR829828
EST:     CAAAACTTTCTATAGAGAATGTGGAGCATCTCCTTATGAAAAGCCTATCT                         GTTCATCTAATTGAGGGTATAATTGATCAAGTTGAGGGCACAGTGCATGTT
genomic: CAAAACTTTCTATAGAGAATGTGGAGCATCTCCTTATGAAAAGCCTATCTgtaagttcta ... tttattacagGTTCATCTAATTGAGGGTATAATTGATCAAGTTGAGGGCACAGTGCATGTT
EST: gi|254314836|gb|GR829829.1|GR829829
EST:     CAAAACTTTCTATAGAGAATGTGGAGCATCTCCTTATGAAAAGCCTATCT                         GTTCATCTAATTGAGGGTATAATTGATCAAGTTGAGGGCACAGTGCATGTT
genomic: CAAAACTTTCTATAGAGAATGTGGAGCATCTCCTTATGAAAAGCCTATCTgtaagttcta ... tttattacagGTTCATCTAATTGAGGGTATAATTGATCAAGTTGAGGGCACAGTGCATGTT
EST: gi|9898715|gb|BE607683.1|BE607683
EST:     CAAAACTTTCTATAGAGAATGTGGAGCATCTCCTTATGAAAAGCCTATCT                         GTTCATCTAATTGAGGGTATAATTGATCAAGTTGAGGGCACAGTGCATGTT
genomic: CAAAACTTTCTATAGAGAATGTGGAGCATCTCCTTATGAAAAGCCTATCTgtaagttcta ... tttattacagGTTCATCTAATTGAGGGTATAATTGATCAAGTTGAGGGCACAGTGCATGTT
EST: gi|15201585|gb|BI424950.1|BI424950
EST:     CAAAACTTTCTATAGAGAATGTGGAGCATCTCCTTATGAAAAGCCTATCT                         GTTCATCTAATTGAGGGTATAATTGATCAAGTTGAGGGCACAGTGCATGTT
genomic: CAAAACTTTCTATAGAGAATGTGGAGCATCTCCTTATGAAAAGCCTATCTgtaagttcta ... tttattacagGTTCATCTAATTGAGGGTATAATTGATCAAGTTGAGGGCACAGTGCATGTT
EST: gi|22524613|gb|BU083424.1|BU083424
EST:     CAAAACTTTCTATAGAGAATGTGGAGCATCTCCTTATGAAAAGCCTATCT                         GTTCATCTAATTGAGGGTATAATTGATCAAGTTGAGGGCACAGTGCATGTT
genomic: CAAAACTTTCTATAGAGAATGTGGAGCATCTCCTTATGAAAAGCCTATCTgtaagttcta ... tttattacagGTTCATCTAATTGAGGGTATAATTGATCAAGTTGAGGGCACAGTGCATGTT
EST: gi|19269301|gb|BM885557.1|BM885557
EST:     CAAAACTTTCTATAGAGAATGTGGAGCATCTCCTTATGAAAAGCCTATCT                         GTTCATCTAATTGAGGGTATAATTGATCAAGTTGAGGGCACAGTGCATGTT
genomic: CAAAACTTTCTATAGAGAATGTGGAGCATCTCCTTATGAAAAGCCTATCTgtaagttcta ... tttattacagGTTCATCTAATTGAGGGTATAATTGATCAAGTTGAGGGCACAGTGCATGTT
EST: gi|11689154|gb|BF596830.1|BF596830
EST:     CTTTCTATAGAGAATGTGGAGCATCTCCTTATGAAAAGCCTATCT                         GTTCATCTAATTGAGGGTATAATTGATCAAGTTGAGGGCACAGTGCATGTT
genomic: CTTTCTATAGAGAATGTGGAGCATCTCCTTATGAAAAGCCTATCTgtaagttcta ... tttattacagGTTCATCTAATTGAGGGTATAATTGATCAAGTTGAGGGCACAGTGCATGTT
EST: gi|58023449|gb|CX710190.1|CX710190
EST:     CAAAACTTTCTATAGAGAATGTGGAGCATCTCCTTATGAAAAGCCTATCT                         GTTCATCTAATTGAGGGTATAATTGATCAAGTTGAGGGCACAGTGCATGTT
genomic: CAAAACTTTCTATAGAGAATGTGGAGCATCTCCTTATGAAAAGCCTATCTgtaagttcta ... tttattacagGTTCATCTAATTGAGGGTATAATTGATCAAGTTGAGGGCACAGTGCATGTT
EST: gi|193461090|gb|FK427187.1|FK427187
EST:     TTCTATAGAGAATTGTTGGTAGCATCTCCTTATGAAAAGCCTATCT                         GTTCATCTAATTGAGGGTATAATTGATCAAGTTGAGGGCACAGTGCATGTT
genomic: TTCTATAGAGAA-TG-TGG-AGCATCTCCTTATGAAAAGCCTATCTgtaagttcta ... tttattacagGTTCATCTAATTGAGGGTATAATTGATCAAGTTGAGGGCACAGTGCATGTT
EST: gi|254334177|gb|GR849095.1|GR849095
EST:     CAAAACTTTCTATAGAGAATGTGGAGCATCTCCTTATGAAAAGCCTATCT                         GTTCATCTAATTGAGGGTATAATTGATCAAGTTGAGGGCACAGTGCATGTT
genomic: CAAAACTTTCTATAGAGAATGTGGAGCATCTCCTTATGAAAAGCCTATCTgtaagttcta ... tttattacagGTTCATCTAATTGAGGGTATAATTGATCAAGTTGAGGGCACAGTGCATGTT
EST: gi|23726775|gb|BU761390.1|BU761390
EST:     CAAAACTTTCTATAGAGAATGTGGAGCATCTCCTTATGAAAAGCCTATCT                         GTTCATCTAATTGAGGGTATAATTGATCAAGTTGAGGGCACAGTGCATGTT
genomic: CAAAACTTTCTATAGAGAATGTGGAGCATCTCCTTATGAAAAGCCTATCTgtaagttcta ... tttattacagGTTCATCTAATTGAGGGTATAATTGATCAAGTTGAGGGCACAGTGCATGTT
EST: gi|207781943|gb|GD750980.1|GD750980
EST:     CAAAACTTTCTATAGAGAATGTGGAGCATCTCCTTATGAAAAGCCTATCT                         GTTCATCTAATTGAGGGTATAATTGATCAAGTTGAGGGCACTAGTGCATGT
genomic: CAAAACTTTCTATAGAGAATGTGGAGCATCTCCTTATGAAAAGCCTATCTgtaagttcta ... tttattacagGTTCATCTAATTGAGGGTATAATTGATCAAGTTGAGGGCAC-AGTGCATGT
EST: gi|298190509|gb|HO032630.1|HO032630
EST:     CAAAACTTTCTATAGAGAATGTGGAGCATCTCCTTATGAAAAGCCTATCT                         GTTCATCTAATTGAGGGTATAATTGATCAAGTTGAGGGCACAGTGCATGTT
genomic: CAAAACTTTCTATAGAGAATGTGGAGCATCTCCTTATGAAAAGCCTATCTgtaagttcta ... tttattacagGTTCATCTAATTGAGGGTATAATTGATCAAGTTGAGGGCACAGTGCATGTT
EST: gi|9203805|gb|BE330029.1|BE330029
EST:     CAAAACTTTCTATAGAGAATGTGGAGCATCTCCTTATGAAAAGCCTATCT                         GTTCATCTAATTGAGGGTATAATTGATCAAGTTGAGGGCACAGTGCATGTT
genomic: CAAAACTTTCTATAGAGAATGTGGAGCATCTCCTTATGAAAAGCCTATCTgtaagttcta ... tttattacagGTTCATCTAATTGAGGGTATAATTGATCAAGTTGAGGGCACAGTGCATGTT
EST: gi|24136736|gb|BU927246.1|BU927246
EST:     CAAAACTTTCTATAGAGAATGTGGAGCATCTCCTTATGAAAAGCCTATCT                         GTTCATCTAATTGAGGGTATAATTGATCAAGTTGAGGGCACAGTGCATGTT
genomic: CAAAACTTTCTATAGAGAATGTGGAGCATCTCCTTATGAAAAGCCTATCTgtaagttcta ... tttattacagGTTCATCTAATTGAGGGTATAATTGATCAAGTTGAGGGCACAGTGCATGTT
EST: gi|21256240|gb|BQ453128.1|BQ453128
EST:     CAAAACTTTCTATAGAGAATGTGGAGCATCTCCTTATGAAAAGCCTATCT                         GTTCATCTAATTGAGGGTATAATTGATCAAGTTGAGGGCACAGTGCATGTT
genomic: CAAAACTTTCTATAGAGAATGTGGAGCATCTCCTTATGAAAAGCCTATCTgtaagttcta ... tttattacagGTTCATCTAATTGAGGGTATAATTGATCAAGTTGAGGGCACAGTGCATGTT
EST: gi|21888564|gb|BQ741777.1|BQ741777
EST:     CAAAACTTTCTATAGAGAATGTGGAGCATCTCCTTATGAAAAGCCTATCT                         GTTCATCTAATTGAGGGTATAATTGATCAAGTTGAGGGCACAGTGCATGTT
genomic: CAAAACTTTCTATAGAGAATGTGGAGCATCTCCTTATGAAAAGCCTATCTgtaagttcta ... tttattacagGTTCATCTAATTGAGGGTATAATTGATCAAGTTGAGGGCACAGTGCATGTT
EST: gi|254334178|gb|GR849096.1|GR849096
EST:     CAAAACTTTCTATAGAGAATGTGGAGCATCTCCTTATGAAAAGCCTATCT                         GTTCATCTAATTGAGGGTATAATTGATCAAGTTGAGGGCACAGTGCATGTT
genomic: CAAAACTTTCTATAGAGAATGTGGAGCATCTCCTTATGAAAAGCCTATCTgtaagttcta ... tttattacagGTTCATCTAATTGAGGGTATAATTGATCAAGTTGAGGGCACAGTGCATGTT
EST: gi|5760321|gb|AI965748.1|AI965748
EST:     CAAAACTTTCTATAGAGAATGTGGAGCATCTCCTTATGAAAAGCCTATCT                         GTTCATCTAATTGAGGGTATAATTGATCAAGTTGAGGGCACAGTGCATGTT
genomic: CAAAACTTTCTATAGAGAATGTGGAGCATCTCCTTATGAAAAGCCTATCTgtaagttcta ... tttattacagGTTCATCTAATTGAGGGTATAATTGATCAAGTTGAGGGCACAGTGCATGTT
EST: gi|16348569|gb|BI974164.1|BI974164
EST:     CAAAACTTTCTATAGAGAATGTGGAGCATCTCCTTATGAAAAGCCTATCT                         GTTCATCTAATTGAGGGTATAATTGATCAAGTTGAGGGCACAGTGCATGTT
genomic: CAAAACTTTCTATAGAGAATGTGGAGCATCTCCTTATGAAAAGCCTATCTgtaagttcta ... tttattacagGTTCATCTAATTGAGGGTATAATTGATCAAGTTGAGGGCACAGTGCATGTT
EST: gi|18038739|gb|BM307033.1|BM307033
EST:     CAAAACTTTCTATAGAGAATGTGGAGCATCTCCTTATGAAAAGCCTATCT                         GTTCATCTAATTGAGGGTATAATTGATCAAGTTGAGGGCACAGTGCATGTT
genomic: CAAAACTTTCTATAGAGAATGTGGAGCATCTCCTTATGAAAAGCCTATCTgtaagttcta ... tttattacagGTTCATCTAATTGAGGGTATAATTGATCAAGTTGAGGGCACAGTGCATGTT
EST: gi|8402724|gb|BE058358.1|BE058358
EST:     CAAAACTTTCTATAGAGAATGTGGAGCATCTCCTTATGAAAAGCCTATCT                         GTTCATCTAATTGAGGGTATAATTGATCAAGTTGAGGGCACAGTGCATGTT
genomic: CAAAACTTTCTATAGAGAATGTGGAGCATCTCCTTATGAAAAGCCTATCTgtaagttcta ... tttattacagGTTCATCTAATTGAGGGTATAATTGATCAAGTTGAGGGCACAGTGCATGTT
EST: gi|11411664|gb|BF423675.1|BF423675
EST:     CAAAACTTTCTATAGAGAATGTGGAGCATCTCCTTATGAAAAGCCTATCT                         GTTCATCTAATTGAGGGTATAATTGATCAAGTTGAGGGCACAGTGCATGTT
genomic: CAAAACTTTCTATAGAGAATGTGGAGCATCTCCTTATGAAAAGCCTATCTgtaagttcta ... tttattacagGTTCATCTAATTGAGGGTATAATTGATCAAGTTGAGGGCACAGTGCATGTT
EST: gi|9902906|gb|BE611874.1|BE611874
EST:     CAAAACTTTCTATAGAGAATGTGGAGCATCTCCTTATGAAAAGCCTATCT                         GTTCATCTAATTGAGGGTATAATTGATCAAGTTGAGGGCACAGTGCATGTT
genomic: CAAAACTTTCTATAGAGAATGTGGAGCATCTCCTTATGAAAAGCCTATCTgtaagttcta ... tttattacagGTTCATCTAATTGAGGGTATAATTGATCAAGTTGAGGGCACAGTGCATGTT
EST: gi|120492821|gb|EH220988.1|EH220988
EST:     CAAAACTTTCTATAGAGAATGTGGAGCATCTCCTTATGAAAAGCCTATCT                         GTTCATCTAATTGAGGGTATAATTGATCAAGTTGAGGGCACAGTGCATGTT
genomic: CAAAACTTTCTATAGAGAATGTGGAGCATCTCCTTATGAAAAGCCTATCTgtaagttcta ... tttattacagGTTCATCTAATTGAGGGTATAATTGATCAAGTTGAGGGCACAGTGCATGTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCGGCCTTCGGAAGATCGAACTATTCCCTTGAGTGTAATTGCAGAGCGCACAAAACTTTCTATAGAGAATGTGGAGCATCTCCTTATGAAAAGCCTATCTgtaagttctaggaaaaaaacaatgtaaaaagtacatttgattttctaacgcaatcatctaaagtagtagacttccaacctgtggatttgagtaatcatcg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA