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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATCTTATCCTTTTAATCCTTTTGCCATGCCTTCTCCTAATGGCATTGCTGAGGCTTCAgtgagtttttcttttgtttttttgtgctcattctcaccttctctttgtctctgtattttccctcttctgtgcagaacttgttcttatccaagtaaggaaaaataacctattagttttcatgcag

Basic information

species Glycine max
transcript GLYMA09G34170.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G34170.1 (Glycine max), 5'ss of exon 6
lower sequence: AT1G32150.1 (Arabidopsis thaliana), 5'ss of exon 6
GGATCTTATCCTTTTAATCCTTTTGCCATGCCTTCTCCTAATGGCATTGCTGAGGCTTCAgtgagtttttcttttgtttttttgtgctcattctcaccttctctttgtctctgtattttccctcttctgtgcagaacttgttcttatccaagtaaggaaaaataacctattagttttcatgcag
|| |||||||| | || ||| | ||| ||||||||||||||||| || ||||| ||||| ||||||||| || |  | |   |||  | |||           | ||  ||   |  |    ||||   || ||||  | ||   || ||                                  
GGGTCTTATCCATATAGTCCCTATGCAATGCCTTCTCCTAATGGAATGGCTGAAGCTTCTgtgagtttt-ctctgttatcactgtttttattagag-------tatgggtc---agatgggatcttgcttgaagaatgt-tttggattcag---------------------------------

upper sequence: GLYMA09G34170.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv02s0012g02250.t01 (Vitis vinifera), 5'ss of exon 6
GGATCTTATCCTTTTAATCCTTTTGCCATGCCTTCTCCTAATGGCATTGCTGAGGCTTCAgtgagtttttcttttgtttttttgtgctcattctcaccttctctttgtctctgtattttccctcttctgtgcagaacttgttcttatccaagtaaggaaaaataacctattagttttcatgcag
|||||||||||||| | ||||||||| ||||||||||| ||||||||||||||| | || |||||||  |    |    |  |||  |||||    |     ||  ||     ||||    || ||   |   || ||                  | | |||||| | | | |||||||| ||
GGATCTTATCCTTTCAGTCCTTTTGCTATGCCTTCTCCAAATGGCATTGCTGAGACCTCTgtgagttaat----taagctactgta-tcatttggtctgctgctgagtagacatatt----ctttttcatatggatct------------------gtagaataacttgtaaattttcatgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6482300|gb|AW201569.1|AW201569
EST:     CTTTTAATCCTTTTGCCATGCCTTCTCCTAATGGCATTGCTGAGGCTTCA                         GGAAACACTCCTGGCAGCATGGAAGCTGATGGCAAGCCTTCTGAGGTGAAG
genomic: CTTTTAATCCTTTTGCCATGCCTTCTCCTAATGGCATTGCTGAGGCTTCAgtgagttttt ... tttcatgcagGGAAACACTCCTGGCAGCATGGAAGCTGATGGCAAGCCTTCTGAGGTGAAG