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TTCTGCCAATTTTCAAGTTTACACTGCATTGCTAAAACCTCATGATAGAATCATGGGACTTGATCTACCACATGGAGGGCATCTTTCTCATGGATACCAGgtattatcaagtatcaacttcaatcattcatttcctgttataaagaaatctatacgtgtagtttattggaaatttgatatcaatattctgataatatttt...
species | Glycine max |
transcript | GLYMA09G33480.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TCATGGGACTTGATCTACCACATGGAGGGCATCTTTCTCATGGATACCAG ACTGACACCAATAAGGTATCTGCAGTCTCCTTATTTTTTGAGACAATGCCAEST: gi|207692648|gb|GD674873.1|GD674873
genomic: TCATGGGACTTGATCTACCACATGGAGGGCATCTTTCTCATGGATACCAGgtattatcaa ... cacaatgcagACTGACACCAATAAGGTATCTGCAGTCTCCTTATTTTTTGAGACAATGCCA
EST: TCATGGGACTTGATCTACCACATGGAGGGCATCTTTCTCATGGATACCAG ACTGACCCCAATAAGGTATCEST: gi|193419865|gb|FK381933.1|FK381933
genomic: TCATGGGACTTGATCTACCACATGGAGGGCATCTTTCTCATGGATACCAGgtattatcaa ... cacaatgcagACTGACACCAATAAGGTATC
EST: TCATGGGACTTGATCTACCACATGGAGGGCATCTTTCTCATGGATACCAG ACTGACACCAATAAGGTATCTGCAGTCTCCTTATTTTTTGAGACAATGCCAEST: gi|193438324|gb|FK400033.1|FK400033
genomic: TCATGGGACTTGATCTACCACATGGAGGGCATCTTTCTCATGGATACCAGgtattatcaa ... cacaatgcagACTGACACCAATAAGGTATCTGCAGTCTCCTTATTTTTTGAGACAATGCCA
EST: TCATGGGACTTGATCTACCACATGGAGGGCATCTTTCTCATGGATACCAG ACTGACACCAATAAGGEST: gi|193325818|gb|FK290257.1|FK290257
genomic: TCATGGGACTTGATCTACCACATGGAGGGCATCTTTCTCATGGATACCAGgtattatcaa ... cacaatgcagACTGACACCAATAAGG
EST: ACCACATGGAGGGCATCTTTCTCATGGATACCAG ACTGACACCGATAAGGTATCTGCAGTCTCCTTATTTTTTGAGACAATGCCAEST: gi|193444846|gb|FK405272.1|FK405272
genomic: ACCACATGGAGGGCATCTTTCTCATGGATACCAGgtattatcaa ... cacaatgcagACTGACACCAATAAGGTATCTGCAGTCTCCTTATTTTTTGAGACAATGCCA
EST: TCATGGGACTTGATCTACCACATGGAGGGCATCTTTCTCATGGATACCAG ACTGACACCAATAAGGTATCTGCAGTCTCCTTATTTTT-GAGACAATGCCAEST: gi|193455615|gb|FK418780.1|FK418780
genomic: TCATGGGACTTGATCTACCACATGGAGGGCATCTTTCTCATGGATACCAGgtattatcaa ... cacaatgcagACTGACACCAATAAGGTATCTGCAGTCTCCTTATTTTTTGAGACAATGCCA
EST: ACCACATGGAGGGCATCTTTCTCATGGATACCAG ACTGACACCAATAAGGTATCTGCAGTCTCCTTATTTTTTGAGACAATGCCAEST: gi|207707628|gb|GD689086.1|GD689086
genomic: ACCACATGGAGGGCATCTTTCTCATGGATACCAGgtattatcaa ... cacaatgcagACTGACACCAATAAGGTATCTGCAGTCTCCTTATTTTTTGAGACAATGCCA
EST: TACCACATGGAGGGCATCTTTCTCATGGATACCAG ACTGACACCAATAAGGTATCTGCAGTCTCCTTATTTTTTGAGACAATGCCAEST: gi|208174031|gb|GD967292.1|GD967292
genomic: TACCACATGGAGGGCATCTTTCTCATGGATACCAGgtattatcaa ... cacaatgcagACTGACACCAATAAGGTATCTGCAGTCTCCTTATTTTTTGAGACAATGCCA
EST: TCATGGGACTTGATCTACCACATGGAGGGCATCTTTCTCATGGATACCAG ACTGACACCAATAAGGTATCTGCAGTCTCCTTATTTTTTGAGACAATGCCAEST: gi|207683188|gb|GD665909.1|GD665909
genomic: TCATGGGACTTGATCTACCACATGGAGGGCATCTTTCTCATGGATACCAGgtattatcaa ... cacaatgcagACTGACACCAATAAGGTATCTGCAGTCTCCTTATTTTTTGAGACAATGCCA
EST: TCATGGGACTTGATCTACCACATGGAGGGCATCTTTCTCATGGATACCAG ACTGACACCAATAAGGTATCTEST: gi|207773709|gb|GD745743.1|GD745743
genomic: TCATGGGACTTGATCTACCACATGGAGGGCATCTTTCTCATGGATACCAGgtattatcaa ... cacaatgcagACTGACACCAATAAGGTATCT
EST: TCATGGGACTTGATCTACCACATGGAGGGCATCTTTCTCATGGATACCAG ACTGACACCAATAAGGTATCTGCAGTCTCCTTATTTTTTGAGACAATGCCAEST: gi|208046332|gb|GD847250.1|GD847250
genomic: TCATGGGACTTGATCTACCACATGGAGGGCATCTTTCTCATGGATACCAGgtattatcaa ... cacaatgcagACTGACACCAATAAGGTATCTGCAGTCTCCTTATTTTTTGAGACAATGCCA
EST: TCATGGGACTTGATCTACCACATGGAGGGCATCTTTCTCATGGATACCAG ACTGACACCAATAAGGTATCTGCAGTCTCCTTATTTTTTGAGACEST: gi|208093400|gb|GD895239.1|GD895239
genomic: TCATGGGACTTGATCTACCACATGGAGGGCATCTTTCTCATGGATACCAGgtattatcaa ... cacaatgcagACTGACACCAATAAGGTATCTGCAGTCTCCTTATTTTTTGAGAC
EST: TCATGGGACTTGATCTACCACATGGAGGGCATCTTTCTCATGGATACCAG ACTGACACCAATAAGGTATCTGCAGTCTCCTTATTTTTTGAGACAATGCCGEST: gi|208160227|gb|GD953483.1|GD953483
genomic: TCATGGGACTTGATCTACCACATGGAGGGCATCTTTCTCATGGATACCAGgtattatcaa ... cacaatgcagACTGACACCAATAAGGTATCTGCAGTCTCCTTATTTTTTGAGACAATGCCA
EST: TCATGGGACTTGATCTACCACATGGAGGGCATCTTTCTCATGGATACCAG ACTGACACCAATAAGGTATCTGCAGTCTCCTTATTTTTTGAGACAATGCCAEST: gi|208025377|gb|GD823425.1|GD823425
genomic: TCATGGGACTTGATCTACCACATGGAGGGCATCTTTCTCATGGATACCAGgtattatcaa ... cacaatgcagACTGACACCAATAAGGTATCTGCAGTCTCCTTATTTTTTGAGACAATGCCA
EST: TCATGGGACTTGATCTACCACATGGAGGGCATCTTTCTCATGGATACCAG ACTGACCCCAATAAGGTATCEST: gi|193422500|gb|FK387593.1|FK387593
genomic: TCATGGGACTTGATCTACCACATGGAGGGCATCTTTCTCATGGATACCAGgtattatcaa ... cacaatgcagACTGACACCAATAAGGTATC
EST: TCATGGGACTTGATCTACCACATGGAGGGCATCTTTCTCATGGATACCAG ACTGACACCAATAAGGTATCTGCAGTCTCCTTATTTTTTGTAGTACAATGCEST: gi|193494239|gb|FK459263.1|FK459263
genomic: TCATGGGACTTGATCTACCACATGGAGGGCATCTTTCTCATGGATACCAGgtattatcaa ... cacaatgcagACTGACACCAATAAGGTATCTGCAGTCTCCTTATTTTTTG-AG-ACAATGC
EST: TCATGGGACTTGATCTACCACATGGAGGGCATCTTTCTCATGGATACCAG ACTGACACCAATAAGGTATCTGCAGTCTCCTTATTTTTTGAGACAATGCCAEST: gi|193551975|gb|FK506562.1|FK506562
genomic: TCATGGGACTTGATCTACCACATGGAGGGCATCTTTCTCATGGATACCAGgtattatcaa ... cacaatgcagACTGACACCAATAAGGTATCTGCAGTCTCCTTATTTTTTGAGACAATGCCA
EST: TCATGGGACTTGATCTACCACATGGAGGGCATCTTTCTCATGGATACCAG ACTGACACCAATAAGGTATCTGCAGTCTCCTTATTTTTTGAGACAATGCCAEST: gi|207714334|gb|GD695855.1|GD695855
genomic: TCATGGGACTTGATCTACCACATGGAGGGCATCTTTCTCATGGATACCAGgtattatcaa ... cacaatgcagACTGACACCAATAAGGTATCTGCAGTCTCCTTATTTTTTGAGACAATGCCA
EST: TCATGGGACTTGATCTACCACATGGAGGGCATCTTTCTCATGGATACCAG ACTGACACCAATAAGGTATCTGCAGTCTCCTTATTTTTTGAGACAATGCCAEST: gi|193543131|gb|FK503682.1|FK503682
genomic: TCATGGGACTTGATCTACCACATGGAGGGCATCTTTCTCATGGATACCAGgtattatcaa ... cacaatgcagACTGACACCAATAAGGTATCTGCAGTCTCCTTATTTTTTGAGACAATGCCA
EST: TCATGGGACTTGATCTACCACATGGAGGGCATCTTTCTCATGGATACCAG ACTGACACCAATAAGGTATCTGCAGTCTCCTTATTTTTTGAGACAATGCCAEST: gi|208083643|gb|GD884027.1|GD884027
genomic: TCATGGGACTTGATCTACCACATGGAGGGCATCTTTCTCATGGATACCAGgtattatcaa ... cacaatgcagACTGACACCAATAAGGTATCTGCAGTCTCCTTATTTTTTGAGACAATGCCA
EST: TCATGGGACTTGATCTACCACATGGAGGGCATCTTTCTCATGGATACCAG ACTGACACCAATAAGGTATCTGCAGTCTCCTTATTTTTTGAGACAATGCCAEST: gi|193313395|gb|FK282024.1|FK282024
genomic: TCATGGGACTTGATCTACCACATGGAGGGCATCTTTCTCATGGATACCAGgtattatcaa ... cacaatgcagACTGACACCAATAAGGTATCTGCAGTCTCCTTATTTTTTGAGACAATGCCA
EST: TCATGGGACTTGATCTACCACATGGAGGGCATCTTTCTCATGGATACCAG ACTGACACCAATAAGGTATCTGCAGTCTCCTTATTTTTTGAGACAATGCCAEST: gi|208038129|gb|GD837025.1|GD837025
genomic: TCATGGGACTTGATCTACCACATGGAGGGCATCTTTCTCATGGATACCAGgtattatcaa ... cacaatgcagACTGACACCAATAAGGTATCTGCAGTCTCCTTATTTTTTGAGACAATGCCA
EST: ATCTACCACATGGAGGGCATCTTTCTCATGGATACCAG ACTGACACCAATAAGGTATCTGCAGTCTCCTTATTTTTTGAGACAATGCCAEST: gi|208220568|gb|GE017144.1|GE017144
genomic: ATCTACCACATGGAGGGCATCTTTCTCATGGATACCAGgtattatcaa ... cacaatgcagACTGACACCAATAAGGTATCTGCAGTCTCCTTATTTTTTGAGACAATGCCA
EST: TCATGG-ACTTGATCTACCACATGGAGGGCATCTTTCTCATGGATACCAG ACTGACACCAATAAGGTATCTGCAGTCTCCTTATTTTTTGAGACAATGCCAEST: gi|193316056|gb|FK281422.1|FK281422
genomic: TCATGGGACTTGATCTACCACATGGAGGGCATCTTTCTCATGGATACCAGgtattatcaa ... cacaatgcagACTGACACCAATAAGGTATCTGCAGTCTCCTTATTTTTTGAGACAATGCCA
EST: GACTTGATCTTACCTACATGGAGGGCATCTTTCTCATGGATACCAG ACTGACACCAATAAGGTATCTGCAGTCTCCTTATTTTTTGAGACAATGCCA
genomic: GACTTGATC-TACC-ACATGGAGGGCATCTTTCTCATGGATACCAGgtattatcaa ... cacaatgcagACTGACACCAATAAGGTATCTGCAGTCTCCTTATTTTTTGAGACAATGCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCTGCCAATTTTCAAGTTTACACTGCATTGCTAAAACCTCATGATAGAATCATGGGACTTGATCTACCACATGGAGGGCATCTTTCTCATGGATACCAGgtattatcaagtatcaacttcaatcattcatttcctgttataaagaaatctatacgtgtagtttattggaaatttgatatcaatattctgataatatttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taaagaaa