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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGGGAAGAATTCAGAGGAAGACGAGTCTGACAAGTCAAAGTCTGAAGTCAATGACGATGAGGAAGATGAGgtagatggagattaacctgttattatgatttgtgtcttgtttaactagtttgttcctttgtataactaattgtataattaatgtgttgtttgctgtttattctgtag

Basic information

species Glycine max
transcript GLYMA09G33070.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G33070.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM5G834758_T01 (Zea mays), 5'ss of exon 6
----------------GAGGGGAAGAATTCAGAGGAAGACGAGTCTGACAAGTCAAAGTCTGAAGTCAATGACGATGAGGAAGATGAGgtagatggagattaacctgttattatgatttgtgtcttgtttaactagtttgttcctttgtataactaattgtataattaatgtgttgtttgct-gtttattctgtag-------
                ||||   || |   ||| ||||| |||||||||||||| ||||| || ||||||||||| || || || ||||    ||  ||   |      ||    |||  |||||| |  |  |  |||  |       |  || ||||  ||     ||   | |  || |  |  |||  | |        
GAAGGCTCCTGCCAAGGAGGAAGAGGAGGAAGATGAAGAGGAGTCTGACAAGTCCAAGTCGGAGGTCAATGACGAGGATGATGAAGAGGGTAGTGAGGAGgtatacaaaatct--attcctgtcttctccatattttttccttagacaaaataccaatta-atccaggatacatagcatgttcatgcattaagcaagttgcta
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208168422|gb|GD966942.1|GD966942
EST:     GAGGAAGATGAG                         GAGGAGGAGGATGATGATGACGACGAGTGAAGATGGTGATACAAGATGAAG
genomic: GAGGAAGATGAGgtagatggag ... tattctgtagGAGGAGGAGGATGATGATGACGACGAGTGAAGATGGTGATACAAGATGAAG
EST: gi|193609975|gb|FK563537.1|FK563537
EST:     CGAGTCTGACAAGTCAAAGTCTGAAGTCAATGACGATGAGGTAAGATGAG                         GAGGAGGAGGATGATGATGACGACGAGTGAAGATGGTGATACAAGATGAA
genomic: CGAGTCTGACAAGTCAAAGTCTGAAGTCAATGACGATGAGG-AAGATGAGgtagatggag ... tattctgtagGAGGAGGAGGATGATGATGACGACGAGTGAAGATGGTGATACAAGATGAA
EST: gi|298172714|gb|HO019754.1|HO019754
EST:     ACGAGTCTGACAAGTCAAAGTCTGAAGTCAATGACGATGAGGAAGATGAG                         GAGGAGGAGGATGATGACGACGACGAGTGAAGATGGTGATACAAGATGAAG
genomic: ACGAGTCTGACAAGTCAAAGTCTGAAGTCAATGACGATGAGGAAGATGAGgtagatggag ... tattctgtagGAGGAGGAGGATGATGATGACGACGAGTGAAGATGGTGATACAAGATGAAG
EST: gi|10710374|gb|BF010065.1|BF010065
EST:     ACGAGTCTGACAAGTCAAAGTCTGAAGTCAATGACGATGAGGAAGATGAG                         GAGGAGGGAG-ATGATGATGACGACG
genomic: ACGAGTCTGACAAGTCAAAGTCTGAAGTCAATGACGATGAGGAAGATGAGgtagatggag ... tattctgtagGAGGAGG-AGGATGATGATGACGACG
EST: gi|208278222|gb|GE075719.1|GE075719
EST:     ACGAGTCTGACAAGTCAAAGTCTGAAGTCAATGACGATGAGGAAGATGAG                         GAGGAGGAGGATGATGATGACGACGAGTGAA
genomic: ACGAGTCTGACAAGTCAAAGTCTGAAGTCAATGACGATGAGGAAGATGAGgtagatggag ... tattctgtagGAGGAGGAGGATGATGATGACGACGAGTGAA
EST: gi|208113143|gb|GD912042.1|GD912042
EST:     ACGAGTCTGACAAGTCAAAGTCTGAAGTCAATGACGATGAGGAAGATGAG                         GAGGAGGAGGATGATGATGAC
genomic: ACGAGTCTGACAAGTCAAAGTCTGAAGTCAATGACGATGAGGAAGATGAGgtagatggag ... tattctgtagGAGGAGGAGGATGATGATGAC
EST: gi|207822195|gb|GD793556.1|GD793556
EST:     ACGAGTCTGACAAGTCAAAGTCTGAAGTCAATGACGATGAGGAAGATGAG                         GAGGAGGAGGATGATGATGACGACGAGTGAAGATGGTG
genomic: ACGAGTCTGACAAGTCAAAGTCTGAAGTCAATGACGATGAGGAAGATGAGgtagatggag ... tattctgtagGAGGAGGAGGATGATGATGACGACGAGTGAAGATGGTG
EST: gi|193615728|gb|FK561941.1|FK561941
EST:     ATGAGGAAGATGAG                         GAGGAGGAGGATGATGATGACGACGAGTGAAGATGGTGATACAAGATGAAG
genomic: ATGAGGAAGATGAGgtagatggag ... tattctgtagGAGGAGGAGGATGATGATGACGACGAGTGAAGATGGTGATACAAGATGAAG
EST: gi|298168571|gb|HO009501.1|HO009501
EST:     ACGAGTCTGACAAGTCAAAGTCTGAAGTCAATGACGATGAGGAAGATGAG                         GAGGAGGAGGATGATGACGACGACGAGT
genomic: ACGAGTCTGACAAGTCAAAGTCTGAAGTCAATGACGATGAGGAAGATGAGgtagatggag ... tattctgtagGAGGAGGAGGATGATGATGACGACGAGT
EST: gi|298181249|gb|HO022688.1|HO022688
EST:     ACGAGTCTGACAAGTCAAAGTCTGAAGTCAATGACGATGAGGAAGATGAG                         GAGGAGGAGGATGATGACGACGACGAGTGAAGATGGTGATACAAGATGAAG
genomic: ACGAGTCTGACAAGTCAAAGTCTGAAGTCAATGACGATGAGGAAGATGAGgtagatggag ... tattctgtagGAGGAGGAGGATGATGATGACGACGAGTGAAGATGGTGATACAAGATGAAG
EST: gi|208177828|gb|GD979125.1|GD979125
EST:     TGAGGAAGATGAG                         GAGGAGGAGGATGATGATGACGACGAGTGAAGATGGTGATACAAGATGAAG
genomic: TGAGGAAGATGAGgtagatggag ... tattctgtagGAGGAGGAGGATGATGATGACGACGAGTGAAGATGGTGATACAAGATGAAG
EST: gi|208310433|gb|GE107711.1|GE107711
EST:     ATGAGGAAGATGAG                         GAGGAGGAGGATGATGATGACGACGAGTGAAGATGGTGATACAAGATGAAG
genomic: ATGAGGAAGATGAGgtagatggag ... tattctgtagGAGGAGGAGGATGATGATGACGACGAGTGAAGATGGTGATACAAGATGAAG
EST: gi|193636232|gb|FK580755.1|FK580755
EST:     GATGAGGAAGAT---                         GAGGAGGAGGATGATGATGACGACGAGTGAAGATGGTGATACAAGATGAAG
genomic: GATGAGGAAGATGAGgtagatggag ... tattctgtagGAGGAGGAGGATGATGATGACGACGAGTGAAGATGGTGATACAAGATGAAG
EST: gi|298196803|gb|HO041546.1|HO041546
EST:     ACGAGTCTGACAAGTCAAAGTCTGAAGTCAATGACGATGAGGAAGATGAG                         GAGGAGGAGGATGATGACGACGACGAGTGAAGATGGTGATACAAGATGAAG
genomic: ACGAGTCTGACAAGTCAAAGTCTGAAGTCAATGACGATGAGGAAGATGAGgtagatggag ... tattctgtagGAGGAGGAGGATGATGATGACGACGAGTGAAGATGGTGATACAAGATGAAG
EST: gi|207706654|gb|GD687496.1|GD687496
EST:     ACGAGTCTGACAAGTCAAAGTCTGAAGTCAATGACGATGAGGAAGATGAG                         GAGGAGGAGGATGATGATGACGACGAGTGAAGATGGTGA
genomic: ACGAGTCTGACAAGTCAAAGTCTGAAGTCAATGACGATGAGGAAGATGAGgtagatggag ... tattctgtagGAGGAGGAGGATGATGATGACGACGAGTGAAGATGGTGA
EST: gi|207821569|gb|GD795982.1|GD795982
EST:     ACGAGTCTGACAAGTCAAAGTCTGAAGTCAATGACGATGAGGAAGATGAG                         GAGGAGGAGGATGAATGATGACG
genomic: ACGAGTCTGACAAGTCAAAGTCTGAAGTCAATGACGATGAGGAAGATGAGgtagatggag ... tattctgtagGAGGAGGAGGATGA-TGATGACG
EST: gi|298167372|gb|HO012635.1|HO012635
EST:     ACGAGTCTGACAAGTCAAAGTCTGAAGTCAATGACGATGAGGAAGATGAG                         GAGGAGGAGGATGATGACGACGACGAGTGAAGATGGTGATACAAGATGAAG
genomic: ACGAGTCTGACAAGTCAAAGTCTGAAGTCAATGACGATGAGGAAGATGAGgtagatggag ... tattctgtagGAGGAGGAGGATGATGATGACGACGAGTGAAGATGGTGATACAAGATGAAG
EST: gi|193325971|gb|FK291026.1|FK291026
EST:     ACGAGTCTGACAAGTCAAAGTCTGAAGTCAATGACGATGAGGAAGATGAG                         GAGGAGGAGGATGATGAT
genomic: ACGAGTCTGACAAGTCAAAGTCTGAAGTCAATGACGATGAGGAAGATGAGgtagatggag ... tattctgtagGAGGAGGAGGATGATGAT
EST: gi|298198226|gb|HO039765.1|HO039765
EST:     ACGAGTCTGACAAGTCAAAGTCTGAAGTCAATGACGATGAGGAAGATGAG                         GAGGAGGAGGATGATGACGACGACGAG
genomic: ACGAGTCTGACAAGTCAAAGTCTGAAGTCAATGACGATGAGGAAGATGAGgtagatggag ... tattctgtagGAGGAGGAGGATGATGATGACGACGAG
EST: gi|207824392|gb|GD793430.1|GD793430
EST:     GTCAATGACGANGAGGAAGTATTGTAG                         GAGGAGGAGGATGATGATGACGACGAGTGAAGATGGTGATACAAGATGAA
genomic: GTCAATGACGATGAGGAAG-A-TG-AGgtagatggag ... tattctgtagGAGGAGGAGGATGATGATGACGACGAGTGAAGATGGTGATACAAGATGAA
EST: gi|193630043|gb|FK578557.1|FK578557
EST:     ACGAGTCTGACAAGTCAAAGTCTGAAGTCAATGACGATGAGGAAGATGAG                         GAGGAGGAGGATGATGATGACGACGAGTGAAGATGGTGA
genomic: ACGAGTCTGACAAGTCAAAGTCTGAAGTCAATGACGATGAGGAAGATGAGgtagatggag ... tattctgtagGAGGAGGAGGATGATGATGACGACGAGTGAAGATGGTGA
EST: gi|207812465|gb|GD785379.1|GD785379
EST:     GAGGAAGATGAG                         GTAGGTAGGTAGGTATGATGATGACGACGAGTGAAGACGGTGATACAAGAT
genomic: GAGGAAGATGAGgtagatggag ... tattctgtagG-AGG-AGG-AGG-ATGATGATGACGACGAGTGAAGATGGTGATACAAGAT
EST: gi|298195313|gb|HO043841.1|HO043841
EST:     ACGAGTCTGACAAGTCAAAGTCTGAAGTCAATGACGATGAGGAAGATGAG                         GAGGAGGAGGATGATGACGACGACGAGTGAAG
genomic: ACGAGTCTGACAAGTCAAAGTCTGAAGTCAATGACGATGAGGAAGATGAGgtagatggag ... tattctgtagGAGGAGGAGGATGATGATGACGACGAGTGAAG
EST: gi|298178667|gb|HO024402.1|HO024402
EST:     ACGAGTCTGACAAGTCAAAGTCTGAAGTCAATGACGATGAGGAAGATGAG                         GAGGAGAAGGATGATGACGACGACGTGTGAAGATGGTGATACAAGATGAAG
genomic: ACGAGTCTGACAAGTCAAAGTCTGAAGTCAATGACGATGAGGAAGATGAGgtagatggag ... tattctgtagGAGGAGGAGGATGATGATGACGACGAGTGAAGATGGTGATACAAGATGAAG
EST: gi|298178133|gb|HO027516.1|HO027516
EST:     ACGAGTCTGACAAGTCAAAGTCTGAAGTCAATGACGATGAGGAAGATGAG                         GAGGAGGAGGATGATGACGACGACGAGTGAAGATGGTGATACAAGATGAAG
genomic: ACGAGTCTGACAAGTCAAAGTCTGAAGTCAATGACGATGAGGAAGATGAGgtagatggag ... tattctgtagGAGGAGGAGGATGATGATGACGACGAGTGAAGATGGTGATACAAGATGAAG
EST: gi|193358877|gb|FK327995.1|FK327995
EST:     ACGAGTCTGACAAGTCAAAGTCTGAAGTCAATGACGATGAGGAAGATGAG                         GAGGAGGAGGATAGATGATGAC
genomic: ACGAGTCTGACAAGTCAAAGTCTGAAGTCAATGACGATGAGGAAGATGAGgtagatggag ... tattctgtagGAGGAGGAGGAT-GATGATGAC
EST: gi|192331023|gb|FK023150.1|FK023150
EST:     ACGAGTCTTACAAGTCAAAGTCTGAAGTCAATGACGATGAGGAAGATGAG                         GAGGAGGAGGGTGATGATGACGA
genomic: ACGAGTCTGACAAGTCAAAGTCTGAAGTCAATGACGATGAGGAAGATGAGgtagatggag ... tattctgtagGAGGAGGAGGATGATGATGACGA
EST: gi|192331024|gb|FK023151.1|FK023151
EST:     ACGAGTCTTACAAGTCAAAGTCTGAAGTCAATGACGATGAGGAAGATGAG                         GAGGAGGAGGGTGATGATGACGACGAGTGAAGATGGTGATACAAGATGAAG
genomic: ACGAGTCTGACAAGTCAAAGTCTGAAGTCAATGACGATGAGGAAGATGAGgtagatggag ... tattctgtagGAGGAGGAGGATGATGATGACGACGAGTGAAGATGGTGATACAAGATGAAG
EST: gi|208030798|gb|GD827982.1|GD827982
EST:     ACGAGTCTGACAAGTCAAAGTCTGAAGTCAATGACGATGAGGAAGATGAG                         GAGGAGGAGGATGATGATGACG
genomic: ACGAGTCTGACAAGTCAAAGTCTGAAGTCAATGACGATGAGGAAGATGAGgtagatggag ... tattctgtagGAGGAGGAGGATGATGATGACG
EST: gi|193308366|gb|FK274431.1|FK274431
EST:     ACGAGTCTGACAAGTCAAAGTCTGAAGTCAATGACGATGAGGAAGATGAG                         GAGGAGGAGGATGATGATGACGACGAGTGAAGATGGTAGAATAACAAGATG
genomic: ACGAGTCTGACAAGTCAAAGTCTGAAGTCAATGACGATGAGGAAGATGAGgtagatggag ... tattctgtagGAGGAGGAGGATGATGATGACGACGAGTGAAGATGGT-GA-TA-CAAGATG
EST: gi|298196338|gb|HO044729.1|HO044729
EST:     ACGAGTCTGACAAGTCAAAGTCTGAAGTCAATGACGATGAGGAAGATGAG                         GAGGAGGAGGATGATGACGACGACGAGTGAAGATGGTGATACAAGATGAAG
genomic: ACGAGTCTGACAAGTCAAAGTCTGAAGTCAATGACGATGAGGAAGATGAGgtagatggag ... tattctgtagGAGGAGGAGGATGATGATGACGACGAGTGAAGATGGTGATACAAGATGAAG
EST: gi|207776349|gb|GD750342.1|GD750342
EST:     ACGAGTCTGACAAGTCAAAGTCTGAAGTCAATGACGATGAGGAAGATGAG                         GAGGAGGAGGATGATGACGACGACGAGTGAAGATGGTGATACAAGATGAAG
genomic: ACGAGTCTGACAAGTCAAAGTCTGAAGTCAATGACGATGAGGAAGATGAGgtagatggag ... tattctgtagGAGGAGGAGGATGATGATGACGACGAGTGAAGATGGTGATACAAGATGAAG
EST: gi|193400566|gb|FK369719.1|FK369719
EST:     ACGAGTCTGACAAGTCAAAGTCTGAAGTCAATGACGATGAGGAAGATGAG                         GAGGAGGAGGATGAT
genomic: ACGAGTCTGACAAGTCAAAGTCTGAAGTCAATGACGATGAGGAAGATGAGgtagatggag ... tattctgtagGAGGAGGAGGATGAT
EST: gi|208251589|gb|GE048766.1|GE048766
EST:     AGGAAGATGAG                         GAGGAGGAGGATGATGATGACGACGAGTGAAGATGGTGATACAAGATGAAG
genomic: AGGAAGATGAGgtagatggag ... tattctgtagGAGGAGGAGGATGATGATGACGACGAGTGAAGATGGTGATACAAGATGAAG
EST: gi|208025534|gb|GD826060.1|GD826060
EST:     ACGAGTCTGACAAGTCAAAGTCTGAAGTCAATGACGATGAGGAAGATGAG                         GAGGAGGAGGATGATGATGACGACGAG
genomic: ACGAGTCTGACAAGTCAAAGTCTGAAGTCAATGACGATGAGGAAGATGAGgtagatggag ... tattctgtagGAGGAGGAGGATGATGATGACGACGAG
EST: gi|208320291|gb|GE122068.1|GE122068
EST:     GAGGAAGATGAG                         GAGGAGGAGGATGATGATGACGACGAGTGAAGATGGTGATACAAGATGAAG
genomic: GAGGAAGATGAGgtagatggag ... tattctgtagGAGGAGGAGGATGATGATGACGACGAGTGAAGATGGTGATACAAGATGAAG
EST: gi|208243296|gb|GE041972.1|GE041972
EST:     ACGAGTCTGACAAGTCAAAGTCTGAAGTCAATGACGATGAGGAAGATGAG                         GAGGAGGAGGATGATGA
genomic: ACGAGTCTGACAAGTCAAAGTCTGAAGTCAATGACGATGAGGAAGATGAGgtagatggag ... tattctgtagGAGGAGGAGGATGATGA
EST: gi|16996546|gb|BM085918.1|BM085918
EST:     ACGAGTCTGACAAGTCAAAGTCTGAAGTCAATGACGATGAGGAAGATGAG                         GAGGAGGAGGATGATGACGACGACGAGTGAAGATGGTGATACAAGATGAAG
genomic: ACGAGTCTGACAAGTCAAAGTCTGAAGTCAATGACGATGAGGAAGATGAGgtagatggag ... tattctgtagGAGGAGGAGGATGATGATGACGACGAGTGAAGATGGTGATACAAGATGAAG
EST: gi|208178108|gb|GD975737.1|GD975737
EST:     GTCAATGACGATTGTAGGTAAGATGAG                         GAGGAGGAGGATGATGATGACGACGAGTGAAGATGGTGATACAAGATGAA
genomic: GTCAATGACGA-TG-AGG-AAGATGAGgtagatggag ... tattctgtagGAGGAGGAGGATGATGATGACGACGAGTGAAGATGGTGATACAAGATGAA
EST: gi|298186052|gb|HO036685.1|HO036685
EST:     ACGAGTCTGACAAGTCAAAGTCTGAAGTCAATGACGATGAGGAAGATGAG                         GAGGAGGAGGATGATGACGACGACGAGTGAAGATGGTGATACAAGATGAAG
genomic: ACGAGTCTGACAAGTCAAAGTCTGAAGTCAATGACGATGAGGAAGATGAGgtagatggag ... tattctgtagGAGGAGGAGGATGATGATGACGACGAGTGAAGATGGTGATACAAGATGAAG
EST: gi|193402630|gb|FK368128.1|FK368128
EST:     ACGAGTCTGACAAGTCAAAGTCTGAAGTCAATGACGATGAGGAAGATGAG                         GAGGAGGAGGATGATGATGACGACGAG
genomic: ACGAGTCTGACAAGTCAAAGTCTGAAGTCAATGACGATGAGGAAGATGAGgtagatggag ... tattctgtagGAGGAGGAGGATGATGATGACGACGAG
EST: gi|207732666|gb|GD708133.1|GD708133
EST:     ACGAGTCTGACAAGTCAAAGTCTGAAGTCAATGACGATGAGGAAGATGAG                         GAGGAGGAGGATGATGATGACGACGAGTGAAGATGGTG
genomic: ACGAGTCTGACAAGTCAAAGTCTGAAGTCAATGACGATGAGGAAGATGAGgtagatggag ... tattctgtagGAGGAGGAGGATGATGATGACGACGAGTGAAGATGGTG
EST: gi|193562819|gb|FK520750.1|FK520750
EST:     ACGAGTCTGACAAGTCAAAGTCTGAAGTCAATGACGATGAGGAAGATGAG                         GAGGAGGAGGATGATGATGACGACGAAGTAGAAGATGGTGATACAAGATGA
genomic: ACGAGTCTGACAAGTCAAAGTCTGAAGTCAATGACGATGAGGAAGATGAGgtagatggag ... tattctgtagGAGGAGGAGGATGATGATGACGACG-AGT-GAAGATGGTGATACAAGATGA
EST: gi|193535623|gb|FK488723.1|FK488723
EST:     ACGAGTCTGACAAGTCAAAGTCTGAAGTCAATGACGATGAGGAAGATGAG                         GAGGAGGAGGATAATGATGACGACGAGTGAAGAT
genomic: ACGAGTCTGACAAGTCAAAGTCTGAAGTCAATGACGATGAGGAAGATGAGgtagatggag ... tattctgtagGAGGAGGAGGATGATGATGACGACGAGTGAAGAT
EST: gi|208331861|gb|GE130698.1|GE130698
EST:     ACGAGTCTGACAAGTCAAAGTCTGAAGTCAATGACGATGAGGAAGATGAG                         G-GGAGGAGGATGATGATGACGACGAGTGAAGATGGTGATACAAGATGAAG
genomic: ACGAGTCTGACAAGTCAAAGTCTGAAGTCAATGACGATGAGGAAGATGAGgtagatggag ... tattctgtagGAGGAGGAGGATGATGATGACGACGAGTGAAGATGGTGATACAAGATGAAG
EST: gi|298165565|gb|HO011614.1|HO011614
EST:     ACGAGTCTGACAAGTCAAAGTCTGAAGTCAATGACGATGAGGAAGATGAG                         GAGGAGGAGGATGATGACGACGACGAGTGAAGATGGTGATACAAGATGAAG
genomic: ACGAGTCTGACAAGTCAAAGTCTGAAGTCAATGACGATGAGGAAGATGAGgtagatggag ... tattctgtagGAGGAGGAGGATGATGATGACGACGAGTGAAGATGGTGATACAAGATGAAG
EST: gi|207687194|gb|GD667880.1|GD667880
EST:     ACGAGTCTGACAAGTCAAAGTCTGAAGTCAATGACGATGAGGAAGATGAG                         GAGGAGGAGGATGATGATGACGA
genomic: ACGAGTCTGACAAGTCAAAGTCTGAAGTCAATGACGATGAGGAAGATGAGgtagatggag ... tattctgtagGAGGAGGAGGATGATGATGACGA
EST: gi|193354397|gb|FK321145.1|FK321145
EST:     ACGAGTCTGACAAGTCAAAGTCTGAAGTCAATGACGATGAGGAAGATGAG                         GAGGAGGAGGATGATGATGAC
genomic: ACGAGTCTGACAAGTCAAAGTCTGAAGTCAATGACGATGAGGAAGATGAGgtagatggag ... tattctgtagGAGGAGGAGGATGATGATGAC
EST: gi|298166049|gb|HO009020.1|HO009020
EST:     ACGAGTCTGACAAGTCAAAGTCTGAAGTCAATGACGATGAGGAAGATGAG                         GAGGAGGAGGATGATGACGACGACGAGTGAAGATGGTGATACAAGATGAAG
genomic: ACGAGTCTGACAAGTCAAAGTCTGAAGTCAATGACGATGAGGAAGATGAGgtagatggag ... tattctgtagGAGGAGGAGGATGATGATGACGACGAGTGAAGATGGTGATACAAGATGAAG
EST: gi|193585627|gb|FK542077.1|FK542077
EST:     ACGAGTCTGACAAGTCAAAGTCTGAAGTCAATGACGATGAGGAAGATGAG                         GAGGAGGAGGATGATG
genomic: ACGAGTCTGACAAGTCAAAGTCTGAAGTCAATGACGATGAGGAAGATGAGgtagatggag ... tattctgtagGAGGAGGAGGATGATG
EST: gi|208196073|gb|GD991708.1|GD991708
EST:     CGAGTCTGACAAGTCAAAAGTCTGAAGTCAATGACGATGAGGAAGATGAG                         GAGGAGGAGGATGATGATGACGACGGGTGAAGATGGTGATACAAGATGAAG
genomic: CGAGTCTGACAAGTCAAA-GTCTGAAGTCAATGACGATGAGGAAGATGAGgtagatggag ... tattctgtagGAGGAGGAGGATGATGATGACGACGAGTGAAGATGGTGATACAAGATGAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAGGGGAAGAATTCAGAGGAAGACGAGTCTGACAAGTCAAAGTCTGAAGTCAATGACGATGAGGAAGATGAGgtagatggagattaacctgttattatgatttgtgtcttgtttaactagtttgttcctttgtataactaattgtataattaatgtgttgtttgctgtttattctgtag

- - - - - - - - - - - - - - - - - - - - -  CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG