1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CCACACGGAATTGACTGTCAGGAGAATCTCATAAAGGAATGTGAGGAGGAAGCAGGAATACCTAGATCTATCTCTGTCAAgtaagttaataacctggtcccaaaccttcctcctctagtgaatggattttcttttcctttgggatggcaagttaactgggtttttttttctgcctatgct...
species | Glycine max |
transcript | GLYMA09G31960.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: ATAAAGGAATGTGAGGAGGAAGCAGGAATACCTAGATCTATCTCTGTCAA AGCCATACCTGTTGGTGCTATTTCATATATGGACATTGATGGGTATAGATAEST: gi|254313812|gb|GR831441.1|GR831441
genomic: ATAAAGGAATGTGAGGAGGAAGCAGGAATACCTAGATCTATCTCTGTCAAgtaagttaat ... cttctgtcagAGCCATACCTGTTGGTGCTATTTCATATATGGACATTGATGGGTATAGATA
EST: GGAATACCTAGATCTATCTCTGTCAA AGCCATACCTGTTGGTGCTATTTCATATATGGACATTGATGGGTATAGATAEST: gi|7285875|gb|AW598362.1|AW598362
genomic: GGAATACCTAGATCTATCTCTGTCAAgtaagttaat ... cttctgtcagAGCCATACCTGTTGGTGCTATTTCATATATGGACATTGATGGGTATAGATA
EST: ATAAAGGAATGTGAGGAGGAAGCAGGAATACCTAGATCTATCTCTGTCAA AGCCATACCTGTTGGTGCTATTTCATATATGGACATTGATGGGTATAGATAEST: gi|19268704|gb|BM884960.1|BM884960
genomic: ATAAAGGAATGTGAGGAGGAAGCAGGAATACCTAGATCTATCTCTGTCAAgtaagttaat ... cttctgtcagAGCCATACCTGTTGGTGCTATTTCATATATGGACATTGATGGGTATAGATA
EST: ATAAAGGAATGTGAGGAGGAAGCAGGAATACCTAGATCTATCTCTGTCAA AGCCATACCTGTTGGTGCTATTTCATATATGGACATTGATGGGTATAGATA
genomic: ATAAAGGAATGTGAGGAGGAAGCAGGAATACCTAGATCTATCTCTGTCAAgtaagttaat ... cttctgtcagAGCCATACCTGTTGGTGCTATTTCATATATGGACATTGATGGGTATAGATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCACACGGAATTGACTGTCAGGAGAATCTCATAAAGGAATGTGAGGAGGAAGCAGGAATACCTAGATCTATCTCTGTCAAgtaagttaataacctggtcccaaaccttcctcctctagtgaatggattttcttttcctttgggatggcaagttaactgggtttttttttctgcctatgct
- - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttcctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gggatgg