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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGGCTGAAGTACGTATTGCTGCTGCTGGGAAAGTAACTAAGTTTTCCCGCATATTAAATCCCGATCTTGCGATTCAGCATATTCTACCATGTGTGAAGgtacagtcacagtaaaaaaattgggattcttagaggttaacatttatgatactagtatgattacaactgataaagtttgcctactatag

Basic information

species Glycine max
transcript GLYMA09G31760.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G31760.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G164352_T04 (Zea mays), 5'ss of exon 6
TGAGGCTGAAGTACGTATTGCTGCTGCTGGGAAAGTAACTAAGTTTTCCCGCATATTAAATCCCGATCTTGCGATTCAGCATATTCTACCATGTGTGAAGgtacagtcacagtaaaaaaattgggattcttagaggttaacatttatgatactagtatgattacaactgataaagtttgcctactatag
|||||||||||| || || || |||||||| |||||||||||||||| |||||||||||||||  | ||  |  | || |||||||| ||||| || |||||   | || || ||  |   | | |  |      |||   |||| |  |   |||   ||||   |     ||||    ||||     
TGAGGCTGAAGTGCGGATAGCAGCTGCTGGAAAAGTAACTAAGTTTTGCCGCATATTAAATCCTCAGCTCTCAGTCCAACATATTCTTCCATGCGTTAAGgtgggggcaaagcaatta---ttgaacaccatttcgttgctatttttcttctgagtg-aattaactcatgccaagtgcatctacag---

upper sequence: GLYMA09G31760.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G122135_T01 (Zea mays), 5'ss of exon 6
TGAGGCTGAAGTACGTATTGCTGCTGCTGGGAAAGTAACTAAGTTTTCCCGCATATTAAATCCCGATCTTGCGATTCAGCATATTCTACCATGTGTGAAGgtacagtcacagtaaaaaaattgggattcttagaggttaacatttatgatactagtatgattac-aactgataaagtttgcctactatag
|||||||||||| || || || |||||||| |||||||||||||| | |||||||||||||||  | ||| | || || |||||||| || || || |||||   ||    | |||  ||||     | ||    |||   |||| |  |   |||    | || |  | ||     |||| |  |||||
TGAGGCTGAAGTGCGAATAGCGGCTGCTGGAAAAGTAACTAAGTTCTGCCGCATATTAAATCCACAGCTTTCAATCCAACATATTCTTCCGTGCGTTAAGgtg-ggt----gcaaagcaattattcgtttt----gttgctattttttttctgagtgaattaactagttcatgctaattgcat-ttatag

upper sequence: GLYMA09G31760.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv17s0000g03870.t01 (Vitis vinifera), 5'ss of exon 7
TGAGGCTGAAGTACGTATTGCTGCTGCTGGGAAAGTAACTAAGTTTTCCCGCATATTAAATCCCGATCTTGCGATTCAGCATATTCTACCATGTGTGAAGgtacagtcaca-gtaaaaaaattgggattcttagaggt-taacatttatgatac-------tagtatgattacaactgataaagtttgcctactatag------------------------------------------
||||||||||||||| || || ||||| || |||||||| || |||| ||| || || || || || ||||| |||||||||||||| || |||||||||||| |    |  | ||||   ||  | ||| |   | | | |  ||| | ||         | ||  | ||  |  |   |  | ||  ||   ||                                            
TGAGGCTGAAGTACGCATAGCAGCTGCAGGAAAAGTAACAAAATTTTGCCGGATTTTGAACCCAGAACTTGCAATTCAGCATATTCTTCCTTGTGTGAAGgtatacatgcttgcaaaagttttaagtttcattatgctatgaagtttcttatgggcttacatggtggggttctatttaccactgcttatctgtcatctgtcttaaaatttgtgactagattagaaaatgtccttctgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207728963|gb|GD706299.1|GD706299
EST:     GCATATTAAATCCCGATCTTGCGATTCAGCATATTCTACCATGTGTGAAG                         GAGTTATCAACTGATTCTTCTCAACATGTTCGCTCTG
genomic: GCATATTAAATCCCGATCTTGCGATTCAGCATATTCTACCATGTGTGAAGgtacagtcac ... cctactatagGAGTTATCAACTGATTCTTCTCAACATGTTCGCTCTG
EST: gi|207734774|gb|GD709267.1|GD709267
EST:     GCATATTAAATCCCGATCTTGCGATTCAGCATATTCTACCATGTGTGAAG                         GAGTTATCAACTGATTCTTCTCAACATGTTCGCTCTGCA
genomic: GCATATTAAATCCCGATCTTGCGATTCAGCATATTCTACCATGTGTGAAGgtacagtcac ... cctactatagGAGTTATCAACTGATTCTTCTCAACATGTTCGCTCTGCA
EST: gi|208293601|gb|GE093505.1|GE093505
EST:     GCATATTAAATCCCGATCTTGCGATTCAGCATATTCTACCATGTGTGAAG                         GAGTTATCAACTGATTCTTCTCAACATGTTCGCTCTGCACTGGCTTCTGTT
genomic: GCATATTAAATCCCGATCTTGCGATTCAGCATATTCTACCATGTGTGAAGgtacagtcac ... cctactatagGAGTTATCAACTGATTCTTCTCAACATGTTCGCTCTGCACTGGCTTCTGTT
EST: gi|207719898|gb|GD704385.1|GD704385
EST:     GCATATTAAATCCCGATCTTGCGATTCAGCATATTCTACCATGTGTGAAG                         GAGTTATCAACTGATTCTTCTCAACATGTTCGCTCTGCACTGGCTTCTGTT
genomic: GCATATTAAATCCCGATCTTGCGATTCAGCATATTCTACCATGTGTGAAGgtacagtcac ... cctactatagGAGTTATCAACTGATTCTTCTCAACATGTTCGCTCTGCACTGGCTTCTGTT
EST: gi|33389673|gb|CA852880.1|CA852880
EST:     GCATATTAAATCCCGATCTTGCGATTCAGCATATTCTACCATGTGTGAAG                         GAGTTATCAACTGATTCTTCTCAACATGTTCGCTCTGCACTGGCTTCTGTT
genomic: GCATATTAAATCCCGATCTTGCGATTCAGCATATTCTACCATGTGTGAAGgtacagtcac ... cctactatagGAGTTATCAACTGATTCTTCTCAACATGTTCGCTCTGCACTGGCTTCTGTT
EST: gi|208072338|gb|GD870270.1|GD870270
EST:     GCATATTAAATCCCGATCTTGCGATTCAGCATATTCTACCATGTGTGAAG                         GAGTTATCAACTGATTCTTCTCAACATGTTCGCTCTGCACTGGCTTCTGTT
genomic: GCATATTAAATCCCGATCTTGCGATTCAGCATATTCTACCATGTGTGAAGgtacagtcac ... cctactatagGAGTTATCAACTGATTCTTCTCAACATGTTCGCTCTGCACTGGCTTCTGTT