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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAGTGTTTACAGACACTAACAGAGCACACATCTGTTGTGATGTCTGTTCTCTGCTGGGACCAATTCCTTTTGTCTTGTTCATTGGACAAAACAGTGAAGgttggttttcacactatttactggttatatatgtattgactatatgcaagttttggaattaatatttgtttaacttttatttgatttatgcag

Basic information

species Glycine max
transcript GLYMA09G27300.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G27300.1 (Glycine max), 5'ss of exon 6
lower sequence: AT5G51980.2 (Arabidopsis thaliana), 5'ss of exon 6
GCAGTGTTTACAGACACTAACAGAGCACACATCTGTTGTGATGTCTGTTCTCTGCTGGGACCAATTCCTTTTGTCTTGTTCATTGGACAAAACAGTGAAGgttggttttcacactatttactggttatatatgtattgactatatgcaagttttggaattaatatttgtttaacttttatttgatttatgcag
 |||||| |||| ||||| || || ||  |||| |||||||||||| |  | |||||||| ||||||||||||||||||||||||||||| || || |||||| |||    |  | ||||    | ||| || | || | | |       || |    ||||| | | |||    | ||              
ACAGTGTATACAAACACTCACTGATCATTCATCAGTTGTGATGTCTCTCATTTGCTGGGATCAATTCCTTTTGTCTTGTTCATTGGACAACACGGTTAAGgttagttcgt-ctttctttaactttcataaatttcttaagt-ttcattctttctcttgttaatgtgtttttccgctgtag-------------