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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGACTTGGAGCAATGCTTTCAGAACTTATTACAAACTGGAGTATTCATACAAATAAGGTGAGAATAGAGTTATCAGTTCTTATGCTATTTTTGTATTCTgtatgattgttagttctttaatttgaaaaggaaaatgattaattttacgaagagattttggcgaagtcctgtatgcatgcatcccgttgattggcaaaatgacttgcatagtatatttaagattcatttataagtttctaaccgtcttttttcatattttggcag

Basic information

species Glycine max
transcript GLYMA09G26620.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G26620.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv16s0100g00640.t01 (Vitis vinifera), 5'ss of exon 3
TGGACTTGGAGCAATGCTTTCAGAACTTATTACAAACTGGAGTATTCATACAAATAAGGTGAGAATAGAGTTATCAGTTCTTATGCTATTTTTGTATTCTgtatgattgttagttctttaatttgaaaaggaaaatgattaattttacgaagagattttggcgaagtcctgtatgcatgcatcccgttgattggcaaaatgacttgcatagtatatttaagattcatttataagtttctaaccgtcttttttcatattttggcag
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-----------------------------------------------------------------------------TCAAAATAGCATCTCTGT------TGGGGCTTCTGGTGCTCTTTTTGGGCTTTTGGGAGCAATGCTTTCA----GAGCTTATTACAAACTGGTCCATGTATACAAACAG--Ggtgagcaatctagcccac-tgttgtcttactccttaccctttgagataatta--gccttgtttgttgcttttgtag