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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGGTTGGGGTCTGGCAACTGATGGAAAAGTCTTGTTTGGAAGTGATGGCAGTTCAACATTGTATCAAATGATTCAAACTGATCCTCAGACATTTAAAGgtttgccaattgcctgtcaatgaagttccattcctttcctttcaccattttttcccaaacttttttgggtccagttttctaacttgacaatactttgtttagttaatgtgtatgccttgcattttagtggaatttacattgccctattttctgtag

Basic information

species Glycine max
transcript GLYMA09G24450.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G24450.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G011893_T01 (Zea mays), 5'ss of exon 6
---------GATGGTTGGGGTCTGGCAACTGATGGAAAAGTCTTGTTTGGAAGTGATGGCAGTTCAACATTGTATCAAATG-ATTCAAACTGATCCTCAGACATTTAAAGgtttgccaattgcctgtcaatgaagttccattcctttcctttcaccattttttcccaaacttttttgggtccagttttctaacttgacaatactttgtttagttaatgtgtatgccttgcattttagtggaatttacattgccctattttctgtag
         ||||||||||||||||| ||||||||||||||  | ||||| ||||||||||  ||||   ||||| |  || ||||||| | |  ||   |  ||   |   || |   |||    || || | | |  |    | |  ||     ||  |  || |   ||||||   | |||                                                                                  
AAAATGCGAGATGGTTGGGGTCTGGCGACTGATGGAAAAGTTCTTTTTGGCAGTGATGGCACCTCAATGCTGTATAAGCTGGATTCAAAGTCA--CTTGAAGgttactattctttctgcttgatattctattagggtttaaatttctttttcttttatgctgaccaa---tttttttcatgcag----------------------------------------------------------------------------------

upper sequence: GLYMA09G24450.1 (Glycine max), 5'ss of exon 6
lower sequence: AT4G25720.1 (Arabidopsis thaliana), 5'ss of exon 6
---------GATGGTTGGGGTCTGGCAACTGATGGAAAAGTCTTGTTTGGAAGTGATGGCAGTTCAACATTGTATCAAATGATTCAAACTGATCCTCAGACATTTAAAGgtttgccaattgcctgtcaatgaagttccattcctttcctttcaccattttttcccaaacttttttgggtccagttttctaacttgacaatactttgtttagttaatgtgtatgccttgcattttagtggaatttacattgccctattttctgtag
         ||||| ||||| ||||| || ||||||||||  || |||||||||||||||| ||| ||||| ||||  |||         || ||||| ||| | ||||||||     ||   |    || |||||   ||  |  ||||   ||| ||  |     | ||   | ||   |||  | ||  ||  || |   |||| |   |  | || |                                            
CATATGAAAGATGGATGGGGACTGGCTACCGATGGAAAAGCGTTATTTGGAAGTGATGGCACTTCTACATTATATCGGATG---------GACCCTCAAACAATGAAAGgtttcttgctta--tactgattaagtt---tttgtgcccttgagccacttacttaattatttacataggg--agtagtata-tttagcattttattgtgtctcttctctgcag-------------------------------------------

upper sequence: GLYMA09G24450.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv16s0050g01140.t01 (Vitis vinifera), 5'ss of exon 6
---------GATGGTTGGGGTCTGGCAACTGATGGAAAAGTCTTGTTTGGAAGTGATGGCAGTTCAACATTGTATCAAATGATTCAAACTGATCCTCAGACATTTAAAGgtttgccaattgcctgtcaatgaagttccattcctttcctttcaccattttttcccaaacttttttgggtccagttttctaacttgacaatactttgtttagttaatgtgtatgccttgcattttagtggaatttacattgccctattttctgtag
         ||||||||||| ||||||||| ||||  |||| ||||||||||||||||| | ||| ||| ||||||| ||         |||||||||  || | |||||| |      | |   |   |  ||||||| | ||||  | | || |||| ||    |  |     || | || |||| |  |||       | || |    |  | |                                                
CATATGCGGGATGGTTGGGGACTGGCAACTAATGGGGAAGTTTTGTTTGGAAGTGATGGAACTTCGACACTGTATCAGAT---------TGATCCTCAATCAATGAAAGgtcttttttatacaaattctttcagttccagtacttttttctaacaatttatttttgaggtaga--ggctacaattttttctcttt------ccttttgggatggagg------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151393930|gb|EV263801.1|EV263801
EST:     CAGTTCAACATTGTATCAAATGATTCAAACTGATCCTCAGACATTTAAAG                         CTGTATCAAAACAAGTTGTCTACTATAAGGGTCATGAAGTACACAATCTCA
genomic: CAGTTCAACATTGTATCAAATGATTCAAACTGATCCTCAGACATTTAAAGgtttgccaat ... ttttctgtagCTGTATCAAAACAAGTTGTCTACTATAAGGGTCATGAAGTACACAATCTCA