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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATATGAAAGAGGGTTGGGGTCTGGCAACTGATGGAAAAGTCTTGTTTGGAAGTGATGGCAGTTCAACATTGTATCAATTTGAGCCTCAACCATTTAAAGgtttgtctgtccaatgaagttccacacttttcctttcactttttatgtgcaaacccctttcccaaatcatttgtgtccacttttcaaacttgaaaatactctgtttagtttatctctgtttgtcttgcattttcatggaatttacattgccctattggctgtacgtag

Basic information

species Glycine max
transcript GLYMA09G24440.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G24440.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G011893_T01 (Zea mays), 5'ss of exon 6
GATATGAAAGAGGGTTGGGGTCTGGCAACTGATGGAAAAGTCTTGTTTGGAAGTGATGGCAGTTCAACATTGTATCAATTTGAGCCTCAACCATTTAAAGgtttgtctgtccaatgaagttccacacttttcctttcactttttatgtgcaaacccctttcccaaatcatttgtgtccacttttcaaacttgaaaatactctgtttagtttatctctgtttgtcttgcattttcatggaatttacattgccctattggctgtacgtag
 | |||  ||| |||||||||||||| ||||||||||||||  | ||||| ||||||||||  ||||   ||||| |  | ||  |  |  || || ||||||   || | |        |     |||    ||  |   ||   ||  |||   ||||  |   | ||      | | ||||   |                                                                                
AAAATGCGAGATGGTTGGGGTCTGGCGACTGATGGAAAAGTTCTTTTTGGCAGTGATGGCACCTCAATGCTGTATAAGCTGGATTCAAAGTCACTTGAAGgtta--ctattc--------tttctgcttgatattcta---ttagggtttaaatttctttttctt-ttatgctgaccaatttttttcatgcag---------------------------------------------------------------------------

upper sequence: GLYMA09G24440.1 (Glycine max), 5'ss of exon 6
lower sequence: AT4G25720.1 (Arabidopsis thaliana), 5'ss of exon 6
GATATGAAAGAGGGTTGGGGTCTGGCAACTGATGGAAAAGTCTTGTTTGGAAGTGATGGCAGTTCAACATTGTATCAATTTGAGCCTCAACCATTTAAAGgtttgtctgtccaatgaagttccacacttttcctttcactttttatgtgcaaacccctttcccaaatcatttgtgtccacttttcaaacttgaaaatactctgtttagtttatctctgtttgtcttgcattttcatggaatttacattgccctattggctgtacgtag
 |||||||||| || ||||| ||||| || ||||||||||  || |||||||||||||||| ||| ||||| ||||   | || |||||| || | ||||||||                         || |||  |||  ||| ||       || ||    |  || ||   |  | | || | | | |  | || | | |||||   || |   | |||||    | | ||                                 
CATATGAAAGATGGATGGGGACTGGCTACCGATGGAAAAGCGTTATTTGGAAGTGATGGCACTTCTACATTATATCGGATGGACCCTCAAACAATGAAAGgttt------------------------cttgcttatactgattaagtttttgtgccctt---gagccacttac-ttaattatttaca-tagggagtagtatatttagc--attttattgtgtctcttctctgcag--------------------------------

upper sequence: GLYMA09G24440.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv16s0050g01140.t01 (Vitis vinifera), 5'ss of exon 6
GATATGAAAGAGGGTTGGGGTCTGGCAACTGATGGAAAAGTCTTGTTTGGAAGTGATGGCAGTTCAACATTGTATCAATTTGAGCCTCAACCATTTAAAGgt-ttgtctgtccaa-----tgaagttccacacttttcctttcactttttatgtgcaaacccctttcccaaatcatttgtgtccacttttcaaacttgaaaatactctgtttagtttatctctgtttgtcttgcattttcatggaatttacattgccctattggctgtacgtag
 |||||   || |||||||| ||||||||| ||||  |||| ||||||||||||||||| | ||| ||| |||||||  |||| |||||| || | |||||| || | | | |||     |  |||||||    |||  | | ||  ||||| |   |        |   |||  ||| | |   |||||   |  || |                                                                          
CATATGCGGGATGGTTGGGGACTGGCAACTAATGGGGAAGTTTTGTTTGGAAGTGATGGAACTTCGACACTGTATCAGATTGATCCTCAATCAATGAAAGgtcttttttatacaaattctttcagttccagtacttttttctaacaatttatttttgaggtagaggctacaattttttctctttccttttggga--tggagg------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151397440|gb|EV267313.1|EV267313
EST:     AAGTGATGGCAGTTCAACATTGTATCAATTTGAGCCTCAACCATTTAAAG                         TTGTATCAAAACAAGTTGTTTACTACAAGGGTCATCAAGTGCACAATCTCA
genomic: AAGTGATGGCAGTTCAACATTGTATCAATTTGAGCCTCAACCATTTAAAGgtttgtctgt ... ctgtacgtagTTGTATCAAAACAAGTTGTTTACTACAAGGGTCATCAAGTGCACAATCTCA