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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGTGGTGCTGATATACATGTCATCGTAAAAATCGAAAGTGCAGACTCTATACCAAATTTGCATTCAATTATCACTGCGTCTGATGGGgtgctaatctaatccttgcattatttctttatgctttactgttgcatgtattttgcttgtggttatgagtcataaagtttgtagagtatttctgtaccgattgcttatagtgacctgtctatttttacccttttgtttag

Basic information

species Glycine max
transcript GLYMA09G23150.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G23150.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G152686_T01 (Zea mays), 5'ss of exon 6
GCTGTGGTGCTGATATACATGTCATCGTAAAAATCGAAAGTGCAGACTCTATACCAAATTTGCATTCAATTATCACTGCGTCTGATGGGgtgctaatctaatccttgcattatttctttatgctttactgttgcatgtattttgcttgtggttatgagtcataaagtttgtagagtatttctgtaccgattgcttatagtgacctgtctatttttacccttttgtttag
| ||   |||||| |||||||| ||||||||||| |||||||||||||| || || || || |||||||| ||||| || |||||||||||   ||         |  ||||| |               ||  |||  ||   || |||        ||| || |||| |  | ||| | || |   ||    |  |||    ||                       
GTTGCAATGCTGACATACATGTTATCGTAAAAATAGAAAGTGCAGACTCCATCCCCAACTTACATTCAATCATCACAGCATCTGATGGGgtaaaaaa--------tatattatctta------------attatatgctttggtctagtgaaatgccatcaaaaggtttatctattatctttgcatgaatgaacttgagttgtatggga--------------------

upper sequence: GLYMA09G23150.1 (Glycine max), 5'ss of exon 6
lower sequence: AT5G52920.1 (Arabidopsis thaliana), 5'ss of exon 6
GCTGTGGTGCTGATATACATGTCATCGTAAAAATCGAAAGTGCAGACTCTATACCAAATTTGCATTCAATTATCACTGCGTCTGATGGGgtgctaatct-----aatcct---tgcattatttctttatgctttac------tgttgcatgtattttgctt--gtggttatgagtcataaagt------ttgtagagtatttc-tgtaccgattgcttatagtgacctgtctatttttacccttttgtttag-------------------
   |||||||||||||||| || || || ||||| || ||||||||||| ||||| || ||||| || |||||||| || || ||||||||| |  | |     || | |   |   || ||  | |    ||||       |   | ||||| | | |||  |||      | | ||    |      ||||  |  | |   | || |   || ||  | || |   | |   | |     | |  ||||                   
ATAGTGGTGCTGATATACACGTGATAGTGAAAATTGAGAGTGCAGACTCCATACCTAACTTGCACTCCATTATCACAGCATCAGATGGGgtgattttttctgtcaaccttgtctattttgttcttctgacttttatatgtcttacagtatgtaatctccttatgtgagagcaactgattggatgttgttttgtgaaacaataaatatatcatatggttggaatggctcttgtgcatgtgattgtctaattagatttgtgtatgtcttacag

upper sequence: GLYMA09G23150.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv16s0050g02180.t01 (Vitis vinifera), 5'ss of exon 6
GCTGTGGTGCTGATATACATGTCATCGTAAAAATCGAAAGTGCAGACTCTATACCAAATTTGCATTCAATTATCACTGCGTCTGATGGGgtgctaatct-aatccttgcattatttctttatgctttactgttgcatgtattttgcttgtggttatgagtcataaagtttgtagagtatttctgtaccgattgcttatagtgacctgtctatttttacccttttgtttag
|||||  ||| ||||| |||||||| || ||||| |||||||| ||||| || || ||| | ||||||||||| || || |||||||||||  |  ||| |||| ||| |||   ||||   |   | || ||   | |   ||  ||    ||  ||   | | |    ||  ||| | |||      ||                                       
GCTGTAATGCAGATATCCATGTCATTGTTAAAATTGAAAGTGCCGACTCCATTCCCAATCTACATTCAATTATTACCGCATCTGATGGGgtaatcgtctgaatctttgtattgcgtcttctagtactgctattttttatggattaattacattttcga--tagagatccggttaagtttgtctagtttcat---------------------------------------