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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTCTTGACTGTGGGAAGGCGAAAAAATCATCATATGATGCACTGAACAACACGCCTTGTTTGCTTCCCACCTGGATCTCTAAGGTTTCAGTTCAACAAgtaaggttatgttatctttaatgtcattggcaataatgatattgtgttccatattacttgaaagcattttttgcttctggtgtctgatatattataatga...

Basic information

species Glycine max
transcript GLYMA09G18490.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G18490.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os01g02884.1 (Oryza sativa), 5'ss of exon 5
TGTTCTTGACTGTGGGAAGGCGAAAAAATCATCATATGATGCACTGAACAACACGCCTTGTTTGCTTCCCACCTGGATCTCTAAGGTTTCAGTTCAACAAgtaaggttatgttatctttaatgtcattggcaataatgatattgtgttccatattacttgaaagcattttttgcttctggtgtctgatatatta-taatga-----------------------------------------------------------------------------
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TGTGGTTGATTGTGGCAAAGCAAAAGAGACATCTTATGATGCATTGAACAACACTCCATGTTTGCTTCCAACCTGGATCTCCAAGGCTTCTGCCAGACAGgt---gtttttctcttgttggagt-att---actaattttatttttttcgtaacactttgaatgaatttgcattttctggaatc-aatatgctaataaatatttttttttaactttaacacgcatatcatcaacttctatcatatcattttggctaattaaattgtataacaatttag

upper sequence: GLYMA09G18490.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv01s0011g04360.t01 (Vitis vinifera), 5'ss of exon 11
TGTTCTTGACTGTGGGAAGGCGAAAAAATCATCATATGATGCACTGAACAACACGCCTTGTTTGCTTCCCACCTGGATCTCTAAGGTTTCAGTTCAACAAgtaaggtt-atgttatctttaatgtcattggcaataatgatattgtgttccatattacttgaaagcattttt-tgctt-----ctggtgtctgatatattataatga
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TGTTGTTGACTGTGGAAAAGCAAAAGAGACATCATATGATGCACTGAATAACACTCCGTGTTTGCTTCCTTCCTGGATCTCTAAGGTTTCTGCTCAACAGgtaaagctcatgttctggttgaaaattttatctttca-gatgcag--attagtagtatttagccaagttttcacacatacagccaagttttaggaaccttcta----