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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTATATATTGGGAGCTGTAGAAACATTTTTGAAAGCAGTTCCTTCTGCTGGGATTTTTAGAGgtaacgagtctcatttttttttggaactaattgtattttatgcatgctgtttatttttaaatgcatgttatttagtagttgcagaagattggtattttgt...

Basic information

species Glycine max
transcript GLYMA09G10390.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G10390.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os08g23440.1 (Oryza sativa), 5'ss of exon 8
TTATATATTGGGAGCTGTAGAAACATTTTTGAAAGCAGTTCCTTCTGCTGGGATTTTTAGAGgta---acgagtctcatttttttttggaactaat---tgtattttatgcatgctgtttatttttaaatgcatgttatttagtagttgcagaagattggtattttgt
 ||| |  | |||||||||||||| |||||| | |||||||||||||||||  |||||| |||||   || | |  ||  |  |  |  |   | |   | || ||||||  || ||   ||  |  ||   |||  |     || ||  ||    ||| ||      
GTATGTGCTAGGAGCTGTAGAAACCTTTTTGGATGCAGTTCCTTCTGCTGGTTTTTTTAAAGgtaggaacaacttacaagtaatactatagtcagtaagtttactttatgtttg-tgaggatggtagaaaaaatggaacagtatacttcaagccttttgttag-----