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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGACTGCCAGGTTCTGTACTAAGTTATGAAGGAAGTGACATATCAGGAGTTCTAGTGCCATGGCTGTATGTTGGCATGTGTTTTTCATCATTTTGCTGGgtaagtggtgagaaatttttatccaagtctaaatttatgattaaggaaagtgttgagacacgagatggaatattagtattaccatttttttttttgtcat...

Basic information

species Glycine max
transcript GLYMA09G09970.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G09970.1 (Glycine max), 5'ss of exon 6
lower sequence: AT2G34880.1 (Arabidopsis thaliana), 5'ss of exon 6
CCGACTGCCAGGTTCTGTACTAAGTTATGAAGGAAGTGACATATCAGGAGTTCTAGTGCCATGGCTGTATGTTGGCATGTGTTTTTCATCATTTTGCTGGgtaagtggtgagaaatttttatccaagtctaaatttatgattaaggaaagtgttgagacacgagatggaatattagtattaccatttttttttttgtcat
||| ||||  || ||| |||||   | ||| |   |||| || ||||| ||||  ||||||||||| ||||| |||||||| |||||| | ||||| |||||||||    | | ||   |||| ||    |  ||| | |||  |     | ||      | | |||     ||  | ||   ||| |            
CCGTCTGCAGGGATCTCTACTATCCTTTGAGGATTGTGAGATCTCAGGGGTTCAGGTGCCATGGCTCTATGTGGGCATGTGCTTTTCAACGTTTTGTTGGgtaagtttacatatatcactatctaa--tcatttttgtcattttgtttcctatttctcatctaaatgt----ttgatgttttgattgtaacag-------

upper sequence: GLYMA09G09970.1 (Glycine max), 5'ss of exon 6
lower sequence: AT1G30810.1 (Arabidopsis thaliana), 5'ss of exon 5
CCGACTGCCAGGTTCTGTACTAAGTTATGAAGGAAGTGACATATCAGGAGTTCTAGTGCCATGGCTGTATGTTGGCATGTGTTTTTCATCATTTTGCTGGgtaagtggtgagaaatttttatccaagtctaaatttatgattaaggaaagtgttgagacacgagatggaatattagtattaccatttttttttttgtcat--
 || || || || ||||||||   || |||||   |||||||||| ||||||||||| |||||||| ||||| || |||||||||||||||||||| |||||||||      | | ||| |  |   | | | ||||| ||     ||  | ||    |    | | | || || |   |   |||| ||| | |   |   
ACGGCTTCCTGGCTCTGTACTCTCTTTTGAAGATTGTGACATATCCGGAGTTCTAGTTCCATGGCTATATGTGGGAATGTGTTTTTCATCATTTTGTTGGgtaagt------acactttcactc---tttgattttattat----aaacattttttctctaatgtttggatgtttgatgtgatatttctttgtcttgaacag

upper sequence: GLYMA09G09970.1 (Glycine max), 5'ss of exon 6
lower sequence: AT4G20400.2 (Arabidopsis thaliana), 5'ss of exon 2
CCGACTGCCAGGTTCTGTACTAAGTTATGAAGGAAGTGACATATCAGGAGTTCTAGTGCCATGGCTGTATGTTGGCATGTGTTTTTCATCATTTTGCTGGgtaagtggtgagaaatttttatccaagtctaaatttatgattaaggaaagtgttgagacacgaga-tggaatattagtattaccatttttttttttgtcat-------------
||| ||||| || || || |||  || |||  |  | || || ||||||||  | ||||||||||| |||||||| ||||| |||||| | ||||| |||||||||         |  || ||  ||  || | |  || |      || |  |||  | |  || |    | ||  |||| ||      || | |||                
CCGTCTGCCCGGATCAGTTCTAGCTTTTGAGAGCTGCGATATCTCAGGAGTCATTGTGCCATGGCTTTATGTTGGAATGTGCTTTTCAACTTTTTGTTGGgtaagtt--------tcattttcttagggtagactcttgct------aattactgaatcgcatgaataatcttttgatatttcctggaaattatatgttgctgaaaaaaagctg

upper sequence: GLYMA09G09970.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv10s0092g00210.t01 (Vitis vinifera), 5'ss of exon 6
CCGACTGCCAGGTTCTGTACTAAGTTATGAAGGAAGTGACATATCAGGAGTTCTAGTGCCATGGCTGTATGTTGGCATGTGTTTTTCATCATTTTGCTGGgtaagtggtgagaaatttt-tatccaagtctaaatttatgattaaggaaagtgttgagacacgagatggaatattagtattaccatttttttttttgtcat
||||||||| |||||||||||  ||| ||||  || ||| || ||||||||||| || |||||||| ||||| || ||||| || ||||||||||| |||||||||  || ||| |  | |||| |||    |  | | | | ||   ||   || |   |  ||    ||    || ||  |  | || ||     |   
CCGACTGCCTGGTTCTGTACTTTGTTTTGAACAAAATGATATCTCAGGAGTTCTGGTCCCATGGCTCTATGTCGGGATGTGCTTCTCATCATTTTGTTGGgtaagttatgggaattcctctatcaaagctgtacatgacgctaaaaagaaaaattaaataaaaagggcaaaaggcagaatctcgttgttcttcagctttg-

upper sequence: GLYMA09G09970.1 (Glycine max), 5'ss of exon 6
lower sequence: EFJ29865 (Selaginella moellendorffii), 5'ss of exon 2
CCGACTGCCAGGTTCTGTACTAAGTTATGAAGGAAGTGACATATCAGGAGTTCTAGTGCCATGGCTGTATGTTGGCATGTGTTTTTCATCATTTTGCTGGgtaagtggtgagaaatttttatccaagtctaaatttatgattaaggaaagtgttgagacacgagatggaatattagtattaccatttttttttttgtcat
 ||||||  ||| || || ||    | |||||     || || || |||||  | |||||||||||||| ||||| |||||||| || || |||||||||||||||                   ||  |  ||  | ||  ||||||    | |||| ||||||  ||  |    | ||  | ||| |||||  |    
ACGACTGAAAGGATCAGTGCTTGAGTTTGAAGCCGACGAAATCTCGGGAGTCGTCGTGCCATGGCTGTACGTTGGGATGTGTTTCTCCTCCTTTTGCTGGgtaagt------------------tagcttgcatcaaggaacaaggaac---tagagaaacgaga-agacaaacgctgtttacttttctttttcag----

upper sequence: GLYMA09G09970.1 (Glycine max), 5'ss of exon 6
lower sequence: EFJ08267 (Selaginella moellendorffii), 5'ss of exon 2
CCGACTGCCAGGTTCTGTACTAAGTTATGAAGGAAGTGACATATCAGGAGTTCTAGTGCCATGGCTGTATGTTGGCATGTGTTTTTCATCATTTTGCTGGgtaagtggtgagaaatttttatccaagtctaaatttatgattaaggaaagtgttgagacacgagatggaatattagtattaccatttttttttttgtcat
 ||||||  ||| || || ||    | |||||     || || || |||||  | |||||||||||||| ||||| |||||||| || || |||||||||||||||                   ||  |  ||  | ||  ||||||    | |||| ||||||  ||  |    | ||  | |||||||||  |    
ACGACTGAAAGGATCAGTGCTCGAGTTTGAAGCCGACGAAATCTCGGGAGTCGTCGTGCCATGGCTGTACGTTGGGATGTGTTTCTCCTCCTTTTGCTGGgtaagt------------------tagcttgcatcaaggaacaaggaac---tagagaaacgaga-agacaaacgctgtttacttttttttttcag----