Sequence
atgc intronic sequence ATGC exonic sequenceTGTCACGTTGATGCTATTAACTTGCATTGTGTGGTTAAAATTGGTGTCATATGCACATACAAACTATGATATGAGAGCACTTACTGTTTCGAATGAAAAGgtagtggttagttttcatgaaaaataatatatttaataagagcttatgctgtacattttatgtgatggttagtttttgagaatgatgaatgaccaaactg...
Basic information
species | Glycine max |
transcript | GLYMA09G07520.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA09G07520.1 (Glycine max), 5'ss of exon 6
lower sequence: AT2G19450.1 (Arabidopsis thaliana), 5'ss of exon 6
TGTCACGTTGATGCTATTAACTTGCATTGTGTGGTTAAAATTGGTGTCATATGCACATACAAACTATGATATGAGAGCACTTACTGTTTCGAATGAAAAGgtagtggttagttttcatgaaaaataa-tatatttaataagagcttatgctgtacattttatgtgatggttagtttttgagaatgatgaatgaccaaactg
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TGTCACTTTGATGCTCCTCACTTGCATTGTGTGGCTAAAGTTGGTTTCTTATGCTCATACTAGCTATGACATAAGATCCCTAGCCAATGCAGCTGATAAGgtaaaa---------tacgaaaaagaagcgtatgtattagtcacttgcactgtgttactgttttaaccaaacactgttatgaactttag------------
upper sequence: GLYMA09G07520.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv11s0016g01930.t01 (Vitis vinifera), 5'ss of exon 6
TGTCACGTTGATGCTATTAACTTGCATTGTGTGGTTAAAATTGGTGTCATATGCACATACAAACTATGATATGAGAGCACTTACTGTTTCGAATGAAAAGgta-gtggttagttttcatgaaaaataatatatttaataagagcttatgctgtacattttatgtgatggt-tagtttttgagaatgatgaatgaccaaactg
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TGTCACACTAATGCTCTTTGCTTGCATTGTGTGGTTAAAATTGGTATCTTTTGCACATACAAATTATGACATGAGAGCAGTTGCCAAGTTAATTGATAAGgtatgagatttctgtccctcagtatctgtat-tttgaaagaaaatgaagttatttgttatac-taatggtattatctttattaataaacaaaaaattagcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|120493969|gb|EH222136.1|EH222136EST: ATGCACATACAAACTATGATATGAGAGCACTTACTGTTTCGAATGAAAAG GGAGAAACATTACCCAATACTTTGATTATGGAGTATCCGTACACTGTGACC
genomic: ATGCACATACAAACTATGATATGAGAGCACTTACTGTTTCGAATGAAAAGgtagtggtta ... tgtgttatagGGAGAAACATTACCCAATACTTTGATTATGGAGTATCCGTACACTGTGACC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGTCACGTTGATGCTATTAACTTGCATTGTGTGGTTAAAATTGGTGTCATATGCACATACAAACTATGATATGAGAGCACTTACTGTTTCGAATGAAAAGgtagtggttagttttcatgaaaaataatatatttaataagagcttatgctgtacattttatgtgatggttagtttttgagaatgatgaatgaccaaactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaataa