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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTACAGCCTTTTTAACTTCTGAGAGATTTTGGCATAAACAAGTTGTTATAAAGACTTCTTACTTTGGTGATTATGACGTGTTATATGTGACCTATCCAGgtatatataaattttgaatgtcttgtatccttttcatgacttttttggttagaaattttatgtggttcctcttaatatag

Basic information

species Glycine max
transcript GLYMA09G07140.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G07140.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv11s0016g02150.t01 (Vitis vinifera), 5'ss of exon 8
ACTACAGCCTTTTTAACTTCTGAGAGATTTTGGCATAAACAAGTTGTTATAAAGACTTCTTACTTTGGTGATTATGACGTGTTATATGTGACCTATCCAGgtat-----atataa--attttgaatgtcttgtatccttttcatgacttttttgg--ttagaaattttatgtggttcctcttaatatag---------------
|||||||| |||||||| | | ||||||| |||   || || ||||| ||||| | ||  |  |||||||||||||| ||  ||||||||| ||||||||||||     ||||||  ||    | | || |||     |||  ||   || ||||  |||      |||  |  |    ||  ||| |                
ACTACAGCTTTTTTAACCTATCAGAGATTCTGGGGCAAGCAGGTTGTCATAAAAAATTTGTTTTTTGGTGATTATGAAGTAATATATGTGAACTATCCAGgtattaattatataataatcccaattttcctgttgtacttttctgctattattggatttattggcatta-ataataaagctatataaaattattgcatttacag