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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCTAATTTGAAGAGTGTAAAAGAATTGATCTACAAGAGGGGCTATGGAAAAGTTAACAAGCAGAGAATTGCCTTAAATGACAACTCTATTGTTGAACAGgtctgtctggtgtaccggctagtcatctttaaatatctccattgcttgtttgttctattactcagttttttcgctgacataacattcaatgccag

Basic information

species Glycine max
transcript GLYMA09G06860.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G06860.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os04g51630.2 (Oryza sativa), 5'ss of exon 6
CCCTAATTTGAAGAGTGTAAAAGAATTGATCTACAAGAGGGGCTATGGAAAAGTTAACAAGCAGAGAATTGCCTTAAATGACAACTCTATTGTTGAACAGgtctgtc---tggtgtaccggctagtcatctttaaatatctccattgcttgtttgttctattactcagttttttcgctgacataacattcaatgccag
||| ||||||||||||||    |||||||||||||||||||||||||||||  | |||||||| |||||  |  | |   |||||    |  | ||  |||| || |   | |  |  |   |  ||  |||| | | | || |||| |   ||    |    ||  || |||                         
CCCAAATTTGAAGAGTGTCCGTGAATTGATCTACAAGAGGGGCTATGGAAAGCTCAACAAGCAAAGAATCCCTCTTACAAACAACAAAGTCATCGAGGAGgtttgccaccttgaatctcacttgttctgcttttactgtgtcaattggtaccttacagt----cttggtgtttgtatcag------------------

upper sequence: GLYMA09G06860.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os08g13690.1 (Oryza sativa), 5'ss of exon 6
CCCTAATTTGAAGAGTGTAAAAGAATTGATCTACAAGAGGGGCTATGGAAAAGTTAACAAGCAGAGAATTGCCTTAAATGACAACTCTATTGTTGAACAGgtctgtctggtgtaccggctagtcatctttaaatatctccattgcttgtttgttctattactcagttttttcgctgacataacattcaatgccag----
||| ||  |||||||||| |  |||||||||||||||||||| || |||||  | ||||||||||| ||| |  |  |  |||||    |  ||||  |||| ||| || | |    |    ||||  |    ||| |       ||       |   || |||  || ||   || | ||   ||      |      
CCCAAACCTGAAGAGTGTCAGGGAATTGATCTACAAGAGGGGTTACGGAAAGCTCAACAAGCAGAGGATTCCTCTTCAGAACAACAAAGTCATTGAGGAGgtatgtttgctcttgtaggctttcattgtgttgtatatatgccattta------cagctaatcaaattcttatttggcctattgttggtcaaccattag

upper sequence: GLYMA09G06860.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G094051_T05 (Zea mays), 5'ss of exon 5
CCCTAATTTGAAGAGTGTAAAAGAATTGATCTACAAGAGGGGCTATGGAAAAGTTAACAAGCAGAGAATTGCCTTAAATGACAACTCTATTGTTGAACAGgtctgtctggtgtaccggctagtcatctt-taaatatctccattgcttgtttgttctattactcagttttttcgctgacataacattcaatgccag
||| || ||||||||||| |  || ||||||||||||||||||||||||||  | ||||||||||| ||  |  |     |||||    |  | ||  |||| |||    |       |||  |||||  |   | | | |  |   | | ||     ||||    |  | ||       |    ||| ||  |||
CCCAAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTATGGAAAGCTGAACAAGCAGAGGATCCCTCTGTCCAACAACCAAGTCATCGAGGAGgtttgtaaacttggaactcta--catctggttcctgtgttctgtttatatatgacaatttacatgatgatctccaccttttggtgttctat--cag

upper sequence: GLYMA09G06860.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM5G868433_T02 (Zea mays), 5'ss of exon 6
CCCTAATTTGAAGAGTGTAAAAGAATTGATCTACAAGAGGGGCTATGGAAAAGTTAACAAGCAGAGAATTGCCTTAAATGACAACTCTATTGTTGAACAGgtctg---tctggtgtaccggctagtcatctttaaatatctccattgcttgtttgttctattactcagttttttcgctgacataacattcaatgccag
||| || ||||||||||| |  || |||||||||||||||||||| |||||| | ||||||||||| ||  |  |   | |||||    |  | ||  |||| ||   ||| | |  | |       ||| ||    |||| | |||  | ||||     ||||    |  | ||    |  |    ||| ||  |||
CCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGGAAAACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAGGAGgtttgcaatcttgagctctgcacctggatcctttgtgatctgc-ttg--tatttgacaatttacatgatgatctccaccatttggtgttctat--cag

upper sequence: GLYMA09G06860.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G344279_T01 (Zea mays), 5'ss of exon 6
CCCTAATTTGAAGAGTGTAAAAGAATTGATCTACAAGAGGGGCTATGGAAAAGTTAACAAGCAGAGAATTGCCTTAAATGACAACTCTATTGTTGAACAGgtctgtctggt-gtaccggctagtcatctttaaatatctccattgcttgtttgttctattactcagttttttcgctgacat--aacattcaatgccag-----
||| || ||||| ||||| |  || ||||||||||||||||||||||||||  | ||||||||||| ||  |  |     |||||    |  | ||  |||| |||    | | | | |    ||   ||    | | ||  ||  |  ||  || ||||   || |||    | |||  |  | | ||   ||         
CCCAAACTTGAACAGTGTCAGGGAGTTGATCTACAAGAGGGGCTATGGAAATCTGAACAAGCAGAGGATCCCTCTGTCCAACAACCAAGTCATCGAGGAGgtttgtaaacttggaactgtacatctggttcctgtgt-tctgtttatatttgtttatatttgacaatttacatgatgatctccaccttttgttgttctatcag

upper sequence: GLYMA09G06860.1 (Glycine max), 5'ss of exon 6
lower sequence: AT2G01250.2 (Arabidopsis thaliana), 5'ss of exon 6
CCCTAATTTGAAGAGTGTAAAAGAATTGATCTACAAGAGGGGCTATGGAAAAGTTAACAAGCAGAGAATTGCCTTAAATGACAACTCTATTGTTGAACAGgtctgt--ctggtgtaccggctagtcatctttaaatatctccattgct-tgtttgttctattactcagttttttcgctgacata-acattcaatgccag-------------------------------------------------------------------------------
|||||| ||||||||||| || ||||||||||||||||| || || |||||  ||||| | ||||| || || || | ||||||||||||||| || ||||| ||      || |  | |    || |  ||   ||  |   ||    | |    | ||  |||||    ||   ||  |||| | |  |||   |||                                                                               
CCCTAACTTGAAGAGTGTCAAGGAATTGATCTACAAGAGAGGTTACGGAAAGCTTAACCACCAGAGGATAGCTTTGACTGACAACTCTATTGTAGAGCAGgtttgagatctgtctctctgtggctcttgcttctttagttttgttctgatatcaagtttaagactcacgaattcttcttccatacaaaaccaaaatcaggctcttggaaagcatggtatcatttgcactgaggatttgatccacgagattctaacagtaggacctcatttcaaggaag

upper sequence: GLYMA09G06860.1 (Glycine max), 5'ss of exon 6
lower sequence: AT2G01250.1 (Arabidopsis thaliana), 5'ss of exon 6
CCCTAATTTGAAGAGTGTAAAAGAATTGATCTACAAGAGGGGCTATGGAAAAGTTAACAAGCAGAGAATTGCCTTAAATGACAACTCTATTGTTGAACAGgtctgt--ctggtgtaccggctagtcatctttaaatatctccattgct-tgtttgttctattactcagttttttcgctgacata-acattcaatgccag
|||||| ||||||||||| || ||||||||||||||||| || || |||||  ||||| | ||||| || || || | ||||||||||||||| || ||||| ||      || |  | |    || |  ||   ||  |   ||    | |    | ||  |||||    ||   ||  |||| | |  |||   |||
CCCTAACTTGAAGAGTGTCAAGGAATTGATCTACAAGAGAGGTTACGGAAAGCTTAACCACCAGAGGATAGCTTTGACTGACAACTCTATTGTAGAGCAGgtttgagatctgtctctctgtggctcttgcttctttagttttgttctgatatcaagtttaagactcacgaattcttcttccatacaaaaccaaaatcag

upper sequence: GLYMA09G06860.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv09s0054g00010.t01 (Vitis vinifera), 5'ss of exon 5
CCCTAATTTGAAGAGTGTAAAAGAATTGATCTACAAGAGGGGCTATGGAAAAGTTAACAAGCAGAGAATTGCCTTAAATGACAACTCTATTGTTGAACAGgtctgtctggtgtaccggctagtcatctttaaatatctccattgcttgtt-tgttctattactcagttttttcgctgac-ataacattcaatgccag
||| ||||||||||||||   ||||||||| ||||||||||| ||||||||  | ||||||||||||| |||||| |  |||||||| ||||| |||||||| | | ||   | | |  |  |  | ||  |  | |   |||| ||| | | |  | || || |  |  ||   |||  |||              
CCCCAATTTGAAGAGTGTGCGAGAATTGATTTACAAGAGGGGGTATGGAAAGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTGGAACAGgtttttatgtcattctgtatcttggttttctatgagc--gattgtttgctatatcttgttgctaacctgcttttgtgatgatag-------------

upper sequence: GLYMA09G06860.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv09s0054g00030.t01 (Vitis vinifera), 5'ss of exon 5
CCCTAATTTGAAGAGTGTAAAAGAATTGATCTACAAGAGGGGCTATGGAAAAGTTAACAAGCAGAGAATTGCCTTAAATGACAACTCTATTGTTGAACAGgtctgtctggtgtaccggctagtcatctttaaatatctccattgcttgtt-tgttctattactcagttttttcgctgacataacattcaatgccag------
||| ||||||||||||||   ||||||||| ||||||||||| || |||||  | ||||||||||||| |||||| |  |||||||| ||||| |||||||| | | ||   | | |  |  |  | ||  |  |     |||| ||| | | |  | || || |  |  ||   |||    |   |    |  ||      
CCCCAATTTGAAGAGTGTGCGAGAATTGATTTACAAGAGGGGGTACGGAAAGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTGGAACAGgtttttatgtcattctgtatcttggttttctatgagt--gattgtttgctatatcttgttgctaacctacttttgtgatgataggctttggggaagtttggt

upper sequence: GLYMA09G06860.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv11s0052g00290.t01 (Vitis vinifera), 5'ss of exon 6
CCCTAATTTGAAGAGTGTAAAAGAATTGATCTACAAGAGGGGCTATGGAAAAGTTAACAAGCAGAGAATTGCCTTAAATGACAACTCTATTGTTGAACAGgtctgtctggtgtaccggctagtcatctttaaatatctccattgcttgtttgttctattactcagttttttcgctgacat---aacattcaatgccag
 || ||||| |||||||| |  ||| |||| ||||||||||| ||||||||| ||||||||||||||| |||  | | ||| ||||| ||  |||||||||| |||    ||||  || ||   | | || | ||| | |  ||  |     | |||| |    | |||| |  ||||||      ||   ||  |||
TCCCAATTTAAAGAGTGTCAGGGAACTGATTTACAAGAGGGGTTATGGAAAACTTAACAAGCAGAGAACTGCTCTGACTGATAACTCAATCATTGAACAGgtttgt----tgta--ggttaaataacattta-tatgttcgatgtat-----tgctataaactggctttt-caatgacattttggtatgttattgcag

upper sequence: GLYMA09G06860.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv09s0054g00140.t01 (Vitis vinifera), 5'ss of exon 4
CCCTAATTTGAAGAGTGTAAAAGAATTGATCTACAAGAGGGGCTATGGAAAAGTTAACAAGCAGAGAATTGCCTTAAATGACAACTCTATTGTTGAACAGgtctgtctggtgtaccgg---ctagtcatctttaaatatctccattgcttgtttgttctattactcagttttttcgctgacataacattcaatgccag
||| ||||||||||||||   ||||||||| ||||||||||| ||||||||  | ||||||||||||| |||||| |  |||||||| ||||| |||||||| | | ||   | | |     | ||  ||| | |     |   ||||||  |  |  |  ||  | | ||||  | ||| |                
CCCCAATTTGAAGAGTGTGCGAGAATTGATTTACAAGAGGGGGTATGGAAAGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTGGAACAGgtttttatgtcattctgtatcttggttttctatgagcgattgt-ttgctttatcttgttgctaacctgcttttgtgatgatag---------------

upper sequence: GLYMA09G06860.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv09s0054g00090.t01 (Vitis vinifera), 5'ss of exon 4
CCCTAATTTGAAGAGTGTAAAAGAATTGATCTACAAGAGGGGCTATGGAAAAGTTAACAAGCAGAGAATTGCCTTAAATGACAACTCTATTGTTGAACAGgtctgtctggtgtaccggctagtcatctttaaatatctccattgcttgtttgttctattactcagttttttcgctgacataacattcaatgccag
||| ||||||||||||||   |||| |||| ||||||||||||||||||||  | ||||||||||||| |||||| |  |||||||| ||||| |||||||| | | ||   |      | ||  | ||| |     |   |||||   |  |  |  ||  | | ||||  | ||| |                
CCCCAATTTGAAGAGTGTGCGAGAACTGATTTACAAGAGGGGCTATGGAAAGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTGGAACAGgtttttatgtcctgtatcttggttttttttgagggattgt-ttgctatatcttgttgctaacctgcttttgtgatgatag---------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192302637|gb|FG994889.1|FG994889
EST:     AAGTTAACAAGCAGAGAATTGCCTTAAATGACAACTTTATTGTTGAACAG                         ACTTTGGGGAAGCATGGGATCATTTGCGTTGAAGATCTGATCCATGAGATA
genomic: AAGTTAACAAGCAGAGAATTGCCTTAAATGACAACTCTATTGTTGAACAGgtctgtctgg ... tcaatgccagACTTTGGGGAAGCATGGGATCATTTGCGTTGAAGATCTGATCCATGAGATA
EST: gi|193691684|gb|FK628905.1|FK628905
EST:     AAGTTAACAAGCAGAGAATTGCCTTAAATGACAACTCTATTGTTGAACAG                         ACTTTGGGGAAGCATGGGATCATTTGCGTTGAAGAT
genomic: AAGTTAACAAGCAGAGAATTGCCTTAAATGACAACTCTATTGTTGAACAGgtctgtctgg ... tcaatgccagACTTTGGGGAAGCATGGGATCATTTGCGTTGAAGAT
EST: gi|7285803|gb|AW598290.1|AW598290
EST:     AAGTTAACAAGCAGAGAATTGCCTTAAATGACGACTCTATTGTTGAACAG                         ACTTTGGGGAAGCATGGGATCATTTGCGTTGAAGATCTGATCCATGAGATA
genomic: AAGTTAACAAGCAGAGAATTGCCTTAAATGACAACTCTATTGTTGAACAGgtctgtctgg ... tcaatgccagACTTTGGGGAAGCATGGGATCATTTGCGTTGAAGATCTGATCCATGAGATA
EST: gi|19345954|gb|BM890834.1|BM890834
EST:     AAGTTAACAAGCAGAGAATTGCCTTAAATGACAACTCTATTGTTGAACAG                         ACTTTGGGGAAGCATGGGATCATTTGCGTTGAAGATCTGATCCATGAGATA
genomic: AAGTTAACAAGCAGAGAATTGCCTTAAATGACAACTCTATTGTTGAACAGgtctgtctgg ... tcaatgccagACTTTGGGGAAGCATGGGATCATTTGCGTTGAAGATCTGATCCATGAGATA
EST: gi|192302636|gb|FG994888.1|FG994888
EST:     AAGTTAACAAGCAGAGAATTGCCTTAAATGACAACTCTATTGTTGAACAG                         ACTTTGGGGAAGCATGGGATCATTTGCGTTGAAGATCTGATCCATGAGATA
genomic: AAGTTAACAAGCAGAGAATTGCCTTAAATGACAACTCTATTGTTGAACAGgtctgtctgg ... tcaatgccagACTTTGGGGAAGCATGGGATCATTTGCGTTGAAGATCTGATCCATGAGATA
EST: gi|209706673|gb|BW676169.1|BW676169
EST:     AAGTTAACAAGCAGAGAATTGCCTTAAATGACAACTCTATTGTTGAACAG                         ACTTTGGGGAAGCATGGGATCATTTGCGTTGAAGATCTGATCCATGAGATA
genomic: AAGTTAACAAGCAGAGAATTGCCTTAAATGACAACTCTATTGTTGAACAGgtctgtctgg ... tcaatgccagACTTTGGGGAAGCATGGGATCATTTGCGTTGAAGATCTGATCCATGAGATA
EST: gi|192307308|gb|FK001266.1|FK001266
EST:     AAGTTAACAAGCAGAGAATTGCCTTAAATGACAACTCTATTGTTGAACAG                         ACTTTGGGGAAGCATGGGATCATCTGCGTTGAAGATCTGATCCATGAGATA
genomic: AAGTTAACAAGCAGAGAATTGCCTTAAATGACAACTCTATTGTTGAACAGgtctgtctgg ... tcaatgccagACTTTGGGGAAGCATGGGATCATTTGCGTTGAAGATCTGATCCATGAGATA
EST: gi|151407003|gb|EV276818.1|EV276818
EST:     AAGTTAACAAGCAGAGAATTGCCTTAAATGACAACTCTATTGTTGAACAG                         ACTTTGGGGAAGCATGGGATCATTTGCGTTGAAGATCTGATCCATGAGATA
genomic: AAGTTAACAAGCAGAGAATTGCCTTAAATGACAACTCTATTGTTGAACAGgtctgtctgg ... tcaatgccagACTTTGGGGAAGCATGGGATCATTTGCGTTGAAGATCTGATCCATGAGATA
EST: gi|18732369|gb|BM527007.1|BM527007
EST:     AAGTTAACAAGCAGAGAATTGCCTTAAATGACAACTCTATTGTTGAACAG                         ACTTTGGGGAAGCATGGGATCATTTGCGTTGAAGATCTGATCCATGAGATA
genomic: AAGTTAACAAGCAGAGAATTGCCTTAAATGACAACTCTATTGTTGAACAGgtctgtctgg ... tcaatgccagACTTTGGGGAAGCATGGGATCATTTGCGTTGAAGATCTGATCCATGAGATA
EST: gi|24205580|gb|BU964833.1|BU964833
EST:     AAGTTAACAAGCAGAGAATTGCCTTAAATGACAACTCTATTGTTGAACAG                         ACTTTGGGGAAGCATGGGATCATTTGCGTTGAAGATCTGATCCATGAGATA
genomic: AAGTTAACAAGCAGAGAATTGCCTTAAATGACAACTCTATTGTTGAACAGgtctgtctgg ... tcaatgccagACTTTGGGGAAGCATGGGATCATTTGCGTTGAAGATCTGATCCATGAGATA
EST: gi|151401089|gb|EV270903.1|EV270903
EST:     AAGTTAACAAGCAGAGAATTGCCTTAAATGACAACTCTATTGTTGAACAG                         ACTTTGGGGAAGCATGGGATCATTTGCGTTGAAGATCTGATCCATGAGATA
genomic: AAGTTAACAAGCAGAGAATTGCCTTAAATGACAACTCTATTGTTGAACAGgtctgtctgg ... tcaatgccagACTTTGGGGAAGCATGGGATCATTTGCGTTGAAGATCTGATCCATGAGATA