1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
AAATTTATCAACATCTGCTTTGATGGAAAGAATGCCAAGTAAATGGCCACGTCCTGTATGGCACGCACCATGGAAGAACTACAGGgtacaaacctcatcccttttttaattatatttaatgaaggataagtggcattagtattttttatttttcattctcagattgtgtgaaccaaaacaatttt...
species | Glycine max |
transcript | GLYMA09G04910.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CAAGTAAATGGCCACGTCCTGTATGGCACGCACCATGGAAGAACTACAGG GTCATCAGCGGTCACTTGGGATGGGTGAGATCTGTTGCAGTTGATCCCAGTEST: gi|8827691|gb|BE211421.1|BE211421
genomic: CAAGTAAATGGCCACGTCCTGTATGGCACGCACCATGGAAGAACTACAGGgtacaaacct ... tttgttgtagGTCATCAGCGGTCACTTGGGATGGGTGAGATCTGTTGCAGTTGATCCCAGT
EST: CAAGTAAATGGCCACGTCCTGTATGGCACGCACCATGGAAGAACTACAGG GTCATCAGCGGTCACTTGGGATGGGTGAGAEST: gi|254313963|gb|GR831592.1|GR831592
genomic: CAAGTAAATGGCCACGTCCTGTATGGCACGCACCATGGAAGAACTACAGGgtacaaacct ... tttgttgtagGTCATCAGCGGTCACTTGGGATGGGTGAGA
EST: GGAAGAACTACAGG GTCATCAGCGGCCACTTAGGATGGGTGAGATCTGTTGCAGTTGATCCCAGTEST: gi|209725601|gb|BW657981.1|BW657981
genomic: GGAAGAACTACAGGgtacaaacct ... tttgttgtagGTCATCAGCGGTCACTTGGGATGGGTGAGATCTGTTGCAGTTGATCCCAGT
EST: CAAGTAGATGGCCACGTCCTGTATGGCACGCACCATGGAAGAACTACAGG GTCATCAGCGGTCACTTGGGATGGGTG
genomic: CAAGTAAATGGCCACGTCCTGTATGGCACGCACCATGGAAGAACTACAGGgtacaaacct ... tttgttgtagGTCATCAGCGGTCACTTGGGATGGGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAATTTATCAACATCTGCTTTGATGGAAAGAATGCCAAGTAAATGGCCACGTCCTGTATGGCACGCACCATGGAAGAACTACAGGgtacaaacctcatcccttttttaattatatttaatgaaggataagtggcattagtattttttatttttcattctcagattgtgtgaaccaaaacaatttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC