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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATCTTGGGTACCCCAAATGAAGACACATGGCCTGGAGTAACTTCATTGCCTGATTTCAAATCAACATTTCCCAAATGGCCATCCAAGgtagttatggctgtttgtcttagacctggactaattgttgtgttcttcattcagtaggaatttaaccttatctcatactttgcag

Basic information

species Glycine max
transcript GLYMA09G03470.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G03470.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv15s0045g00310.t01 (Vitis vinifera), 5'ss of exon 7
AATCTTGGGTACCCCAAATGAAGACACATGGCCTGGAGTAACTTCATTGCCTGATTTCAAATCAACATTTCCCAAATGGCCATCCAAGgtagttatggctgtttgtcttagacctggactaattgttgtgttcttcattcagtaggaat-ttaaccttat----ctcatactttgcag
  | ||||| || |||||||| || |||||||| ||||| ||||| ||||||||||| || ||  | ||||| || |||||  | ||||||   ||||      || ||  |  || |   ||       || |||||   || | ||  || |  || |    |   ||||||||||
GGTATTGGGCACACCAAATGAGGATACATGGCCAGGAGTGACTTCTTTGCCTGATTTTAAGTCTGCCTTTCCTAAGTGGCCTCCTAAGgtaa--atgg------gttttgcatgtgcatctatctcatgatttttcatattgttgaaagattcatattgtgcttcctctactttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192309059|gb|FK001835.1|FK001835
EST:     TAACTTCATTGCCTGATTTCAAATCAACATTTCCCAAATGGCCATCCAAG                         GACTTAGCAAATGTGGTTCCAAATCTTGATGCAGCTGGTCTTAATCTTCTT
genomic: TAACTTCATTGCCTGATTTCAAATCAACATTTCCCAAATGGCCATCCAAGgtagttatgg ... tactttgcagGACTTAGCAAATGTGGTTCCAAATCTTGATGCAGCTGGTCTTAATCTTCTT
EST: gi|9563850|gb|BE473359.1|BE473359
EST:     TAACTTCATTGCCTGATTTCAAATCAACATTTCCCAAATGGCCATCCAAG                         GACTTAGCAAATGTGGTTCCAAATCTTGATGCAGCTGGTCTTAATCTTCTT
genomic: TAACTTCATTGCCTGATTTCAAATCAACATTTCCCAAATGGCCATCCAAGgtagttatgg ... tactttgcagGACTTAGCAAATGTGGTTCCAAATCTTGATGCAGCTGGTCTTAATCTTCTT
EST: gi|193499843|gb|FK464760.1|FK464760
EST:     TAACTTCATTGCCTGATTTCAAATCAACATTTCCCAAATGGCCATCCAAG                         GACTTAGCAAATGTGGTTCCAAATCTTGATGCAGCTGGTCTTAATCTTCTT
genomic: TAACTTCATTGCCTGATTTCAAATCAACATTTCCCAAATGGCCATCCAAGgtagttatgg ... tactttgcagGACTTAGCAAATGTGGTTCCAAATCTTGATGCAGCTGGTCTTAATCTTCTT
EST: gi|192330929|gb|FK023102.1|FK023102
EST:     TAACTTCATTGCCTGATTTCAAATCAACATTTCCCAAATGGCCATCCAAG                         GACTTAGCAAATGTGGTTCCAAATCTTGATGCAGCTGGTCTTAATCTTCTT
genomic: TAACTTCATTGCCTGATTTCAAATCAACATTTCCCAAATGGCCATCCAAGgtagttatgg ... tactttgcagGACTTAGCAAATGTGGTTCCAAATCTTGATGCAGCTGGTCTTAATCTTCTT
EST: gi|192312081|gb|FK003858.1|FK003858
EST:     TAACTTCATTGCCTGATTTCAAATCAACATTTCCCAAATGGCCATCCAAG                         GACTTAGCAAATGTGGTTCCAAATCTTGACGCAGCTGGTCTTAATCTTCTT
genomic: TAACTTCATTGCCTGATTTCAAATCAACATTTCCCAAATGGCCATCCAAGgtagttatgg ... tactttgcagGACTTAGCAAATGTGGTTCCAAATCTTGATGCAGCTGGTCTTAATCTTCTT
EST: gi|193356410|gb|FK323123.1|FK323123
EST:     TAACTTCATTGCCTGATTTCAAATCAACATTTCCCAAATGGCCATCCAAG                         GACTTAGCAAATGTGGTTCCAAATCTTGATGCAGCTGGTCTTAATCTTCTT
genomic: TAACTTCATTGCCTGATTTCAAATCAACATTTCCCAAATGGCCATCCAAGgtagttatgg ... tactttgcagGACTTAGCAAATGTGGTTCCAAATCTTGATGCAGCTGGTCTTAATCTTCTT