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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAGTTGTGGCTAGTTTGAGTGCAAGGGTTGCTTCTATTGGGGACAACCGTCTTGGGGGTTGGCACTCTTATCGATCTTCAAAGGCTTCTCTTAATCAATgtaagactttattattactattattattattgttgttgttgttattatctctgtcataagatattcaatatgataagtataagtgtctcattcaatctga...

Basic information

species Glycine max
transcript GLYMA09G03440.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G03440.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv10s0003g05770.t01 (Vitis vinifera), 5'ss of exon 5
GCAGTTGTGGCTAGTTTGAGTGCAAGGGTTGCTTCTATTGGGGACAACCGTCTTGGGGGTTGGCACTCTTATCGATCTTCAAAGGCTTCTCTTAATCAATgtaagactttattattactattattattattgttgttgttgtta-ttatctctgtcataagatattcaatatgataagtataagtgtctcattcaatctga
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GCAGTTGTGGCAAACCTAAGTGCTAGAGTGGGATCTATAGGAGACAACCGCTTAGGAGGATGGCATTCTTATCGATCTTCAAAGGCTGCACTTAATCAATgtatgatatctctttaaagagttct-tcagaatggacttagtagcttaaaggcctcaaggaaagtcctctgttccttgtccacttccttctaacagtgaaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31467255|gb|CD409283.1|CD409283
EST:     ATCGATCTTCAAAGGCTTCTCTTAATCAAT                         TATCGAAGACTGCCTCCCTGGAATTTGCAAGAAGGAAGGATCCAGTTGTAT
genomic: ATCGATCTTCAAAGGCTTCTCTTAATCAATgtaagacttt ... attctaacagTATCGAAGACTGCCTCCCTGGAATTTGCAAGAAGGAAGGATCCAGTTGTAT
EST: gi|14990094|gb|BI315767.1|BI315767
EST:     TCTTGGGGGTTGGCACTCTTATCGATCTTCAAAGGCTTCTCTTAATCAAT                         TATCGAAGACTGCCTCCCTGGGATTTGCAAGAAGGAAGGATCCAGTTGTAT
genomic: TCTTGGGGGTTGGCACTCTTATCGATCTTCAAAGGCTTCTCTTAATCAATgtaagacttt ... attctaacagTATCGAAGACTGCCTCCCTGGAATTTGCAAGAAGGAAGGATCCAGTTGTAT
EST: gi|31467256|gb|CD409284.1|CD409284
EST:     ATCGATCTTCAAAGGCTTCTCTTAATCAAT                         CATCGAAGACTGCCTCCCTGGAATTTGCAAGAAGGAAGGATCCAGTGGTAT
genomic: ATCGATCTTCAAAGGCTTCTCTTAATCAATgtaagacttt ... attctaacagTATCGAAGACTGCCTCCCTGGAATTTGCAAGAAGGAAGGATCCAGTTGTAT