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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTGCACAAATTGCAGGATGTAAAACTATTGTTCTTGCAAATCCTCCAACTCGGGATGGCACTACATGCAAGgtatttatctatttttgtttgaaaattatagtcatgatgttgttcttgttctgagcaatgttttcctgcag

Basic information

species Glycine max
transcript GLYMA09G02960.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G02960.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G058584_T01 (Zea mays), 5'ss of exon 8
CCTGCACAAATTGCAGGATGTAAAACTATTGTTCTTGCAAATCCTCCAACTCGGGATGGCACTACATGCAAGgta---tttatctatttttgtttgaaaattatagtc---atgat--gttgttcttgttctgagcaatgttttcctgcag
|||||||| ||||| ||||| ||||||||||||||||| |  || || |  || ||||| |  | ||||||||||   || || |     ||       ||| |  |    |  ||  |||| |   |   |    | |  ||||||||||
CCTGCACAGATTGCTGGATGCAAAACTATTGTTCTTGCCACACCACCTAGCCGTGATGGTAGCATATGCAAGgtacacttgatatggaactgcaccgggattcttttttaaacaattggttgatggagcattatatacttgtttcctgcag

upper sequence: GLYMA09G02960.1 (Glycine max), 5'ss of exon 6
lower sequence: AT5G63890.1 (Arabidopsis thaliana), 5'ss of exon 6
CCTGCACAAATTGCAGGATGTAAAACTATTGTTCTTGCAAATCCTCCAACTCGGGATGGCACTACATGCAAGgtatttatcta--------tttttgtttgaaaatt----atagtcatgatgttgttcttgtt-ctgagca-atgttttcctgcag------
||||| |||||||| |||||||||||  |||||||||||| ||| |||| |  |||||| |  |  || |||||| |  ||          |||||   ||  |||     |||||  | |  ||  ||||  | ||||||  |||||||  |   |      
CCTGCTCAAATTGCTGGATGTAAAACAGTTGTTCTTGCAACTCCACCAAGTAAGGATGGAAGCATTTGTAAGgtagtactccgagctgtcttttttccctgggaatatccgatagtacttacatttatcttactgctgagcttatgttttaatcttgtttcag