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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCATGATGCGTCTATTCAGTCCCCGGAAAACGACATTGCTTTTTGTTATACGTGATAAAACAAAGgtctagaatcctggtcctttcttgagaacgtacacttttgtgatttcctgctatttaatgttttatcatgtttctgcctgtctatgcag

Basic information

species Glycine max
transcript GLYMA09G02490.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G02490.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os12g41170.1 (Oryza sativa), 5'ss of exon 6
GTCATGATGCGTCTATTCAGTCCCCGGAAAACGACATTGCTTTTTGTTATACGTGATAAAACAAAGgtctag------aatcctggtcctttcttgagaacgtacacttttgtgattt---cctgctattta-atgttttatcatgtttctgcctgtctatgcag-----------------------------
|||||||||||| | ||||||||||| || || ||| |  | |||||||||||||||||||| | ||| |          || |  | |||||||||  |  |  ||| || || |||   |  ||| |||  |  | | |||||   ||    |   |  ||                               
GTCATGATGCGTTTGTTCAGTCCCCGAAAGACAACACTATTATTTGTTATACGTGATAAAACCAGGgtttgcctctttgttctttattctttcttgaatatatttactgttatgttttgtgcaagctgtttggaaatataatcattgctccatttacttgggccaatctcagacacatcgttgttttcatgtag

upper sequence: GLYMA09G02490.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G390374_T01 (Zea mays), 5'ss of exon 6
GTCATGATGCGTCTATTCAGTCCCCGGAAAACGACATTGCTTTTTGTTATACGTGATAAAACAAAGgtctagaatcctggtcctttcttgagaacgtacacttttgtgatttcctgctatttaatgttttatcatgtttctgcctgtctatgcag
|||||||||||| | || ||||| ||||| || ||| | || |||||||||||||||||||| | ||| |      |   |  | | |||    | |  |  |||||    | |   ||   ||   ||   || ||   ||  |    ||| ||
GTCATGATGCGTTTGTTTAGTCCTCGGAAGACAACACTACTATTTGTTATACGTGATAAAACCAGGgtttgcctctcctttattatattgcattcttgaatatttgttccattcacttaagcaaatcttagacacgtcattgttt--tcatgtag

upper sequence: GLYMA09G02490.1 (Glycine max), 5'ss of exon 6
lower sequence: AT5G45160.1 (Arabidopsis thaliana), 5'ss of exon 7
GTCATGATGCGTCTATTCAGTCCCCGGAAAACGACATTGCTTTTTGTTATACGTGATAAAACAAAGgtctagaatcctggtcctttcttgagaacgtacacttttgtgatttcctgctatttaatgttttatcatgtttctgcctgtctatgcag
|||||| ||||  | || || || || ||||| ||  | |||||||| |||||||||||||||||||| | |           |||    |    |||   || | |||||    |  | || || |||  |    ||||||| | | |    ||
GTCATGCTGCGATTGTTTAGCCCTCGTAAAACAACTCTTCTTTTTGTCATACGTGATAAAACAAAGgtttgg----------tttttgcaattgagtatgattct-tgatt----gtgagttcatatttcttagattttctgcttttgttcttag

upper sequence: GLYMA09G02490.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv10s0116g00810.t01 (Vitis vinifera), 5'ss of exon 5
GTCATGATGCGTCTATTCAGTCCCCGGAAAACGACATTGCTTTTTGTTATACGTGATAAAACAAAGgtctagaatc---ctggtcctttcttgagaacgtacacttttgtgatttcctgctatttaatgttttatcatgtttctgcctgtctatgcag--------------------------
|||||||||||  |||| || || || ||||||||| | || |||||||||||||||||||||||||||| || ||   |||    |||  |   || ||    | |||  || |  ||   ||||   ||||  | | ||| | ||  |  |    |                          
GTCATGATGCGCTTATTTAGCCCACGCAAAACGACACTACTGTTTGTTATACGTGATAAAACAAAGgtctggagtcaaactgcaaattttcttgaaaggtgt-ttgttgaaatatattgggctttagctttttcccctttttattccatttgaaattgttgcctgttcatgactgtacatgtag