1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
ATATGTCCTGAACTCACCTCGTATGAAGAAGTTTTTTGACTATATCCAACTTCCAAATTTTGACATTGCTGCAGATGCTGCAGCAACCTTTAAGgtgggtattgtgtgaaagaacttgtgatcacagtttccttattttgtgccatgcactcttttgcaaagagtcaatgccatatggcgttgtgttgtttcag
species | Glycine max |
transcript | GLYMA09G01370.4 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TCCAACTTCCAAATTTTGACATTGCTGCAGATGCTGCAGCAACCTTTAAG GAGCTCTTGACAAGACATAAATCTACTGTGGCTGAATTCCTTTCCAAGAATEST: gi|207836097|gb|GD808754.1|GD808754
genomic: TCCAACTTCCAAATTTTGACATTGCTGCAGATGCTGCAGCAACCTTTAAGgtgggtattg ... gttgtttcagGAGCTCTTGACAAGACATAAATCTACTGTGGCTGAATTCCTTTCCAAGAAT
EST: TCCAACTTCCAAATTTTGACATTGCTGCAGATGCTGCAGCAACCTTTAAG GAGCTCTTGACAAGACATAAATCTACTGTGGCTGAATTCCTTTCCAAGAATEST: gi|208082045|gb|GD883411.1|GD883411
genomic: TCCAACTTCCAAATTTTGACATTGCTGCAGATGCTGCAGCAACCTTTAAGgtgggtattg ... gttgtttcagGAGCTCTTGACAAGACATAAATCTACTGTGGCTGAATTCCTTTCCAAGAAT
EST: TCCAACTTCCAAATTTTGACATTGCTGCAGATGCTGCAGCAACCTTTAAG GAGCTCTTGACAAGACATAAATCTACTGTGGCTGAATTCCTTTCCAAGAATEST: gi|193447808|gb|FK414073.1|FK414073
genomic: TCCAACTTCCAAATTTTGACATTGCTGCAGATGCTGCAGCAACCTTTAAGgtgggtattg ... gttgtttcagGAGCTCTTGACAAGACATAAATCTACTGTGGCTGAATTCCTTTCCAAGAAT
EST: TCCAACTTCCAAATTTTGACATTGCTGCAGATGCTGCAGCAACCTTTAAG GAGCTCTTGACAAGACATAAATCTAEST: gi|254314656|gb|GR829649.1|GR829649
genomic: TCCAACTTCCAAATTTTGACATTGCTGCAGATGCTGCAGCAACCTTTAAGgtgggtattg ... gttgtttcagGAGCTCTTGACAAGACATAAATCTA
EST: TCCAACTTCCAAATTTTGACATTGCTGCAGATGCTGCAGCAACCTTTAAG GAGCTCTTGACAAGACATAAATCTACTGTGGCTGAATTCCTTTCCAAGAATEST: gi|15203298|gb|BI426066.1|BI426066
genomic: TCCAACTTCCAAATTTTGACATTGCTGCAGATGCTGCAGCAACCTTTAAGgtgggtattg ... gttgtttcagGAGCTCTTGACAAGACATAAATCTACTGTGGCTGAATTCCTTTCCAAGAAT
EST: TCCAACTTCCAAATTTTGACATTGCTGCGGATGCTGCAGCAACCTTTAAG GAGCTCTTGACAAGACATAAATCTACTGTAGCTGAATTCCTATCCAAGAATEST: gi|21887763|gb|BQ740976.1|BQ740976
genomic: TCCAACTTCCAAATTTTGACATTGCTGCAGATGCTGCAGCAACCTTTAAGgtgggtattg ... gttgtttcagGAGCTCTTGACAAGACATAAATCTACTGTGGCTGAATTCCTTTCCAAGAAT
EST: TCCAACTTCCAAATTTTGACATTGCTGCAGATGCTGCAGCAACCTTTAAG GAGCTCTTGACAAGACATAAATCTACTGTGGCTGAATTCCTTTCCAAGAATEST: gi|11414041|gb|BF425981.1|BF425981
genomic: TCCAACTTCCAAATTTTGACATTGCTGCAGATGCTGCAGCAACCTTTAAGgtgggtattg ... gttgtttcagGAGCTCTTGACAAGACATAAATCTACTGTGGCTGAATTCCTTTCCAAGAAT
EST: TCCAACTTCCAAATTTTGACATTGCTGCAGATGCTGCAGCAACCTCTAAG GAGCTCTTGACAAGACATAAATCTACTGCGGCTGAATTCCTTTCCAAGAAT
genomic: TCCAACTTCCAAATTTTGACATTGCTGCAGATGCTGCAGCAACCTTTAAGgtgggtattg ... gttgtttcagGAGCTCTTGACAAGACATAAATCTACTGTGGCTGAATTCCTTTCCAAGAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATATGTCCTGAACTCACCTCGTATGAAGAAGTTTTTTGACTATATCCAACTTCCAAATTTTGACATTGCTGCAGATGCTGCAGCAACCTTTAAGgtgggtattgtgtgaaagaacttgtgatcacagtttccttattttgtgccatgcactcttttgcaaagagtcaatgccatatggcgttgtgttgtttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG