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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGCTCTTGACAAGACATAAATCTACTGTGGCTGAATTCCTTTCCAAGAATTATGAATGGgtaggttccccttcaacccaagtataaagtagcattttaattttaatttatacacttgtatgccaccttttttcttttccttactttctattgctagata...

Basic information

species Glycine max
transcript GLYMA09G01370.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G01370.2 (Glycine max), 5'ss of exon 6
lower sequence: Vv10s0405g00020.t01 (Vitis vinifera), 5'ss of exon 6
GAGCTCTTGACAAGACATAAATCTACTGTGGCTGAATTCCTTTCCAAGAATTATGAATGGgtaggttcccct-tcaacccaagtataaagtagcattttaattttaatttata--cacttgtatgccaccttttttcttttccttactttctattgctagata
|| || ||||| || ||||||||||| || |||||||| ||||| ||||| ||||| |||||| ||     | |||      ||||| |      |    | | |  |||| |  || |||||    || |  ||       | || |     | |  ||   
GAACTATTGACGAGGCATAAATCTACGGTTGCTGAATTTCTTTCTAAGAACTATGACTGGgtaagtggttttctcatggtttgtatataagcatgtgcacactctggtttagaagcatttgtaatgtacatggttgaagaagcatattagtgctcgtaag---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207836097|gb|GD808754.1|GD808754
EST:     CAAGACATAAATCTACTGTGGCTGAATTCCTTTCCAAGAATTATGAATGG                         TTTTTCGCAGAATATAACACT
genomic: CAAGACATAAATCTACTGTGGCTGAATTCCTTTCCAAGAATTATGAATGGgtaggttccc ... ctgctttcagTTTTTCGCAGAATATAACACT
EST: gi|27424482|gb|CA936002.1|CA936002
EST:     CAAGACATAAATCTACTGTGGCTGAATTCCTTTCCAAGAATTATGAATGG                         TTTTTCGCAGAATATAACACTAAGCTGTTGGAATCTTCCAATTATATTACA
genomic: CAAGACATAAATCTACTGTGGCTGAATTCCTTTCCAAGAATTATGAATGGgtaggttccc ... ctgctttcagTTTTTCGCAGAATATAACACTAAGCTGTTGGAATCTTCCAATTATATTACA
EST: gi|208082045|gb|GD883411.1|GD883411
EST:     CAAGACATAAATCTACTGTGGCTGAATTCCTTTCCAAGAATTATGAATGG                         TTTTTCGCAGAATATAACACTAAGCTGTTGGAATCTT
genomic: CAAGACATAAATCTACTGTGGCTGAATTCCTTTCCAAGAATTATGAATGGgtaggttccc ... ctgctttcagTTTTTCGCAGAATATAACACTAAGCTGTTGGAATCTT
EST: gi|254314656|gb|GR829649.1|GR829649
EST:     CAAGACATAAATCTACTGTGGCTGAATTCCTTTCCAAGAATTATGAATGG                         TTTTTCGCAGA
genomic: CAAGACATAAATCTACTGTGGCTGAATTCCTTTCCAAGAATTATGAATGGgtaggttccc ... ctgctttcagTTTTTCGCAGA
EST: gi|15203298|gb|BI426066.1|BI426066
EST:     CAAGACATAAATCTACTGTAGCTGAATTCCTATCCAAGAATTATGAATGG                         TTTTTTGCAGAATATAACACTAAGCTGTTGGAATCTTCCAATTATATTACA
genomic: CAAGACATAAATCTACTGTGGCTGAATTCCTTTCCAAGAATTATGAATGGgtaggttccc ... ctgctttcagTTTTTCGCAGAATATAACACTAAGCTGTTGGAATCTTCCAATTATATTACA