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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTCACCATTTTTTAGGCATGACACTAGGTTGCGTGCTCTACGCTTCCTTGATCACATGCTTgtaagatttttttagtttagccttttagcattacaaaatgtataacatgcaaattttagagttgaagttcttgatgatgtgtcctcctttccttcag

Basic information

species Glycine max
transcript GLYMA09G00470.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G00470.1 (Glycine max), 5'ss of exon 6
lower sequence: AT1G22870.1 (Arabidopsis thaliana), 5'ss of exon 6
GCTCACCATTTTTTAGGCATGACACTAGGTTGCGTGCTCTACGCTTCCTTGATCACATGCTTgtaagatttttttagtttagccttttagcattaca-aaatgtataacatgcaaattttagagttg-aagttcttgatgatgtgtcctcctttccttcag
| ||    |||||  |    ||||||||||||||||| || || ||||||||||| ||||||||| |  | ||  | ||||  | |   |  | | | | | ||  |   ||  | ||  | |  |  ||   |||   |   | |  |  |||  | |||
GATCTAGTTTTTTCCGAAGCGACACTAGGTTGCGTGCCCTCCGTTTCCTTGATCATATGCTTgtatgtatattaaattttaatcatc--gtttcagacagacgtg-attttgatagttggaaacatataaaacctttggggcatttttttatttattgcag

upper sequence: GLYMA09G00470.1 (Glycine max), 5'ss of exon 6
lower sequence: AT1G71410.1 (Arabidopsis thaliana), 5'ss of exon 6
GCTCACCATTTTTTAGGCATGACACTAGGTTGCGTGCTCTACGCTTCCTTGATCACATGCTTgtaag-----------------atttttttagtttagcc--ttttagcattacaaaatg-tataacatgcaaattttagagttgaagttcttgatgatgtg-tcctcctttccttcag
| ||    |||||  |   |||| ||||||| |||||||| ||||||||||||||  |||||||| |                 ||| ||| ||     |   | |||| | |   | ||| |  || ||| |   |  | | ||||    |||   |      |  ||  ||  | |||
GATCGAATTTTTTCCGAAGTGACGCTAGGTTACGTGCTCTCCGCTTCCTTGATCATTTGCTTgtacgtgtatatgcttccaataattgtttcagacagactgttcttagaagtcttagatgatggaaaatgtat-ctccacatttgataaccttttcggaacaattttctctttatccag

upper sequence: GLYMA09G00470.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv18s0089g00030.t01 (Vitis vinifera), 5'ss of exon 6
GCTCACCATTTTTTAGGCATGACACTAGGTTGCGTGCTCTACGCTTCCTTGATCACATGCTTgtaaga-------tttttttagtt-----tagccttt----tagcattacaaaa--------tgtataacatgcaaattttaga-gttgaagt--------tcttgatgatgtgtcctcctttccttcag
| || ||||||||| |  |||||||||||||||||||||| |||||| | || |||||||||||| ||       ||| ||| | |       || |||    ||  ||||| |||        || || | | | |||  | ||| ||||  |         |||   | |    |  |  |||  | |||
GTTCTCCATTTTTTCGAGATGACACTAGGTTGCGTGCTCTTCGCTTCTTGGACCACATGCTTgtatgaagttatatttctttggatgtcacctgcttttgacataagattactaaaaaacattgtgcatgagaaggaaaaataagaagttggtggcaatggaatctgagtaacaaattttatttttttgcag