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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACAAGTGTTGCCTCTTTCTTTGTCAGTAGAGTGGACACTCTCATTGACAAGGCCCTTGAGAAAATTGGCACCCCAGAGGCTCTTAATCTACGTGGGAAGgtaactgtttattgttttccaaactaatttctattcttggctttggatttattacactttcaaatgtcaaatatgctcttcggattgcatattgaattttacag

Basic information

species Glycine max
transcript GLYMA08G47790.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G47790.2 (Glycine max), 5'ss of exon 6
lower sequence: AT5G13420.1 (Arabidopsis thaliana), 5'ss of exon 5
TACAAGTGTTGCCTCTTTCTTTGTCAGTAGAGTGGACACTCTCATTGACAAGGCCCTTGAGAAAATTGGCACCCCAGAGGCTCTTAATCTACGTGGGAAGgtaactgtttattgttttccaaactaatttctattcttggctttggatttattacactttcaaatgtcaaat-atgctcttcggattgcatattgaattttacag
||| |||||||| || |||||||||||| | ||||| |||||||| ||||||   |||||| ||||||| ||||| || ||  |  |||| |||||||||||||   | ||||  |  |  |      |  ||  |  | |  ||    ||    | |  |  ||| || || ||    ||    |||||               
TACCAGTGTTGCTTCCTTCTTTGTCAGTCGGGTGGATACTCTCATGGACAAGATGCTTGAGCAAATTGGTACCCCTGAAGCCTTAGATCTCCGTGGGAAGgtaaagctctattcatcgctgag----atcttacaccagccactgtgagtagagtattagcttatgacacatgatatgtttactcttgcag--------------

upper sequence: GLYMA08G47790.2 (Glycine max), 5'ss of exon 6
lower sequence: Vv01s0150g00190.t01 (Vitis vinifera), 5'ss of exon 5
TACAAGTGTTGCCTCTTTCTTTGTCAGTAGAGTGGACACTCTCATTGACAAGGCCCTTGAGAAAATTGGCACCCCAGAGGCTCTTAATCTACGTGGGAAGgtaactgtttattgttttccaaactaatttctattcttggctttggatttattacactttcaaatgtcaaatatgctcttcggattgcatattgaattttacag
||||||||||||||| |||||||||||| | || ||||| ||||||||||||   |||||||||||||| || |||||||| ||| |||| || || |||||||   |  |||  ||| ||| | ||||   || |||   |  || ||||  || |     |    | |||||   | | ||| |     ||  || ||  ||
TACAAGTGTTGCCTCCTTCTTTGTCAGTCGGGTAGACACCCTCATTGACAAGTTGCTTGAGAAAATTGGAACTCCAGAGGCCCTTGATCTCCGAGGAAAGgtaa---taaattaatttacaatcaaattgtcatcctt--ttgagggtttaaaactc-----aggacctaatat---catgggactt----ttatatgttctag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14991073|gb|BI316746.1|BI316746
EST:     AGGCCCTTGAGAAAATTGGCACCCCAGAGGCTCTTAATCTACGTGGGAAG                         GCAGCAGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGAAATTT
genomic: AGGCCCTTGAGAAAATTGGCACCCCAGAGGCTCTTAATCTACGTGGGAAGgtaactgttt ... aattttacagGCAGCAGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGAAATTT
EST: gi|10709227|gb|BF008951.1|BF008951
EST:     AGGCCCTTGAGAAAATTGGCACCCCAGAGGCTCTTAATCTACGTGGGAAG                         GCAGCAGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGAAATTT
genomic: AGGCCCTTGAGAAAATTGGCACCCCAGAGGCTCTTAATCTACGTGGGAAGgtaactgttt ... aattttacagGCAGCAGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGAAATTT
EST: gi|6963502|gb|AW432195.1|AW432195
EST:     AGGCCCTTGAGAAAATTGGCACCCCAGAGGCTCTTAATCTACGTGGGAAG                         GCAGCAGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGAAATTT
genomic: AGGCCCTTGAGAAAATTGGCACCCCAGAGGCTCTTAATCTACGTGGGAAGgtaactgttt ... aattttacagGCAGCAGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGAAATTT
EST: gi|37997207|gb|CF808796.1|CF808796
EST:     AGGCCCTTGAGAAAATTGGCACCCCAGAGGCTCTTAATCTACGTGGGAAG                         GCAGCAGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGAAATTT
genomic: AGGCCCTTGAGAAAATTGGCACCCCAGAGGCTCTTAATCTACGTGGGAAGgtaactgttt ... aattttacagGCAGCAGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGAAATTT
EST: gi|192327587|gb|FK020634.1|FK020634
EST:     AGGCCCTTGAGAAAATTGGCACCCCAGAGGCTCTTAATCTACGTGGGAAG                         GCAGCAGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGAAATTT
genomic: AGGCCCTTGAGAAAATTGGCACCCCAGAGGCTCTTAATCTACGTGGGAAGgtaactgttt ... aattttacagGCAGCAGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGAAATTT
EST: gi|13481537|gb|BG510880.1|BG510880
EST:     AGGCCCTTGAGAAAATTGGCACCCCAGAGGCTCTTAATCTACGTGGGAAG                         GCAGCAGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGAAATTT
genomic: AGGCCCTTGAGAAAATTGGCACCCCAGAGGCTCTTAATCTACGTGGGAAGgtaactgttt ... aattttacagGCAGCAGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGAAATTT
EST: gi|15000920|gb|BI321734.1|BI321734
EST:     AGGCCCTTGAGAAAATTGGCACCCCAGAGGCTCTTAATCTACGTGGGAAG                         GCAGCAGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGAAATTT
genomic: AGGCCCTTGAGAAAATTGGCACCCCAGAGGCTCTTAATCTACGTGGGAAGgtaactgttt ... aattttacagGCAGCAGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGAAATTT
EST: gi|58024883|gb|CX711624.1|CX711624
EST:     GGCCC-TGNAGAAAATTGGCACCCCAGAGGCTCTTAATCTACGTGGGAAG                         GCAGCAGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGAAATTT
genomic: GGCCCTTG-AGAAAATTGGCACCCCAGAGGCTCTTAATCTACGTGGGAAGgtaactgttt ... aattttacagGCAGCAGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGAAATTT
EST: gi|14259727|gb|BG882635.1|BG882635
EST:     AGGCCCTTGAGAAAATTGGCACCCCAGAGGCTCTTAATCTACGTGGGAAG                         GCAGCAGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGAAATTT
genomic: AGGCCCTTGAGAAAATTGGCACCCCAGAGGCTCTTAATCTACGTGGGAAGgtaactgttt ... aattttacagGCAGCAGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGAAATTT
EST: gi|6719617|gb|AW307264.1|AW307264
EST:     AGGCCCTTGAGAAAATTGGCACCCCAGAGGCTCTTAATCTACGTGGGAAG                         GCAGCAGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGAAATTT
genomic: AGGCCCTTGAGAAAATTGGCACCCCAGAGGCTCTTAATCTACGTGGGAAGgtaactgttt ... aattttacagGCAGCAGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGAAATTT
EST: gi|192309108|gb|FG999391.1|FG999391
EST:     TCTTAATCTACGTGGGAAG                         GCAGCAGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGAAATTT
genomic: TCTTAATCTACGTGGGAAGgtaactgttt ... aattttacagGCAGCAGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGAAATTT
EST: gi|9986111|gb|BE660219.1|BE660219
EST:     AGGCCCTTGAGAAAATTGGCACCCCAGAGGCTCTTAATCTACGTGGGAAG                         GCAGCAGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGAAATTT
genomic: AGGCCCTTGAGAAAATTGGCACCCCAGAGGCTCTTAATCTACGTGGGAAGgtaactgttt ... aattttacagGCAGCAGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGAAATTT
EST: gi|58018946|gb|CX705688.1|CX705688
EST:     GGCCC-TGAGAAAAATTGGCACCCCAGAGGCTCTTAATCTACGTGGGAAG                         GCAGCAGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGAAATTT
genomic: GGCCCTTGAG-AAAATTGGCACCCCAGAGGCTCTTAATCTACGTGGGAAGgtaactgttt ... aattttacagGCAGCAGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGAAATTT
EST: gi|5058472|gb|AI736883.1|AI736883
EST:     AGGCCCTTGAGAAAATTGGCACCCCAGAGGCTCTTAATCTACGTGGGAAG                         GCAGCAGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGAAATTT
genomic: AGGCCCTTGAGAAAATTGGCACCCCAGAGGCTCTTAATCTACGTGGGAAGgtaactgttt ... aattttacagGCAGCAGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGAAATTT
EST: gi|57575715|gb|CX548690.1|CX548690
EST:     AGGCCCTTGAGAAAATTGGCACCCCAGAGGCTCTTAATCTACGTGGGAAG                         GCAGCAGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGAAATTT
genomic: AGGCCCTTGAGAAAATTGGCACCCCAGAGGCTCTTAATCTACGTGGGAAGgtaactgttt ... aattttacagGCAGCAGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGAAATTT
EST: gi|9439855|gb|BE440368.1|BE440368
EST:     AGGCCCTTGAGAAAATTGGCACCCCAGAGGCTCTTAATCTACGTGGGAAG                         GCAGCAGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGANATTT
genomic: AGGCCCTTGAGAAAATTGGCACCCCAGAGGCTCTTAATCTACGTGGGAAGgtaactgttt ... aattttacagGCAGCAGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGAAATTT
EST: gi|10846217|gb|BF071272.1|BF071272
EST:     AGGCCCTTGAGAAAATTGGCACCCCAGAGGCTCTTAATCTACGTGGGAAG                         GCAGCAGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGAAATTT
genomic: AGGCCCTTGAGAAAATTGGCACCCCAGAGGCTCTTAATCTACGTGGGAAGgtaactgttt ... aattttacagGCAGCAGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGAAATTT
EST: gi|17021884|gb|BM092918.1|BM092918
EST:     AGGCCCTTGAGAAAATTGGCACCCCAGAGGCTCTTAATCTACGTGGGAAG                         GCAGCAGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGAAATTT
genomic: AGGCCCTTGAGAAAATTGGCACCCCAGAGGCTCTTAATCTACGTGGGAAGgtaactgttt ... aattttacagGCAGCAGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGAAATTT
EST: gi|6847089|gb|AW349379.1|AW349379
EST:     AGGCCCTTGAGAAAATTGGCACCCCAGAGGCTCTTAATCTACGTGGGAAG                         GCAGCAGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGAAATTT
genomic: AGGCCCTTGAGAAAATTGGCACCCCAGAGGCTCTTAATCTACGTGGGAAGgtaactgttt ... aattttacagGCAGCAGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGAAATTT
EST: gi|57575533|gb|CX548508.1|CX548508
EST:     AGGCCCTTGAGAAAATTGGCACCCCAGAGGCTCTTAATCTACGTGGGAAG                         GCAGCAGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGAAATTT
genomic: AGGCCCTTGAGAAAATTGGCACCCCAGAGGCTCTTAATCTACGTGGGAAGgtaactgttt ... aattttacagGCAGCAGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGAAATTT
EST: gi|4304431|gb|AI443618.1|AI443618
EST:     AGGCCCTTGAGAAAATTGGCACCCCAGAGGCTCTTAATCTACGTGGGAAG                         GCAGCAGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGAAATTT
genomic: AGGCCCTTGAGAAAATTGGCACCCCAGAGGCTCTTAATCTACGTGGGAAGgtaactgttt ... aattttacagGCAGCAGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGAAATTT
EST: gi|21889891|gb|BQ743104.1|BQ743104
EST:     AGGCCCTTGAGAAAATTGGCACCCCAGAGGCTCTTAATCTACGTGGGAAG                         GCAGCAGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGAAATTT
genomic: AGGCCCTTGAGAAAATTGGCACCCCAGAGGCTCTTAATCTACGTGGGAAGgtaactgttt ... aattttacagGCAGCAGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGAAATTT
EST: gi|298189058|gb|HO037461.1|HO037461
EST:     AGGCCCTTGAGAAAATTGGCACCCCAGAGGCTCTTAATCTACGTGGGAAG                         GCAGCAGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGAAATTT
genomic: AGGCCCTTGAGAAAATTGGCACCCCAGAGGCTCTTAATCTACGTGGGAAGgtaactgttt ... aattttacagGCAGCAGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGAAATTT
EST: gi|298189327|gb|HO037730.1|HO037730
EST:     AGGCCCTTGAGAAAATTGGCACCCCAGAGGCTCTTAATCTACGTGGGAAG                         GCAGCAGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGAAATTT
genomic: AGGCCCTTGAGAAAATTGGCACCCCAGAGGCTCTTAATCTACGTGGGAAGgtaactgttt ... aattttacagGCAGCAGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGAAATTT
EST: gi|16346820|gb|BI972415.1|BI972415
EST:     AGGCCCTTGAGAAAATTGGCACCCCAGAGGCTCTTAATCTACGTGGGAAG                         GCAGCAGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGAAATTT
genomic: AGGCCCTTGAGAAAATTGGCACCCCAGAGGCTCTTAATCTACGTGGGAAGgtaactgttt ... aattttacagGCAGCAGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGAAATTT
EST: gi|12774774|gb|BG239722.1|BG239722
EST:     TTAATCTACGTGGGAAG                         GCAGCAGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGAAATTT
genomic: TTAATCTACGTGGGAAGgtaactgttt ... aattttacagGCAGCAGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGAAATTT
EST: gi|7692059|gb|AW760174.1|AW760174
EST:     AGGCCCTTGAGAAAATTGGCACCCCAGAGGCTCTTAATCTACGTGGGAAG                         GCAGCAGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGAAATTT
genomic: AGGCCCTTGAGAAAATTGGCACCCCAGAGGCTCTTAATCTACGTGGGAAGgtaactgttt ... aattttacagGCAGCAGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGAAATTT
EST: gi|298172428|gb|HO019468.1|HO019468
EST:     AGGCCCTTGAGAAAATTGGCACCCCAGAGGCTCTTAATCTACGTGGGAAG                         GCAGCAGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGAAATTT
genomic: AGGCCCTTGAGAAAATTGGCACCCCAGAGGCTCTTAATCTACGTGGGAAGgtaactgttt ... aattttacagGCAGCAGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGAAATTT
EST: gi|17963707|gb|BM270453.1|BM270453
EST:     AGGCCCTTGAGAAAATTGGCACCCCAGAGGCTCTTAATCTACGTGGGAAG                         GCAGCAGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGAAATTT
genomic: AGGCCCTTGAGAAAATTGGCACCCCAGAGGCTCTTAATCTACGTGGGAAGgtaactgttt ... aattttacagGCAGCAGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGAAATTT
EST: gi|26269430|gb|CA820493.1|CA820493
EST:     AGGCCCTTGAGAAAATTGGCACCCCAGTGGCCCTTAATCTACGCGGGAAG                         GCAGCGGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGAAATTT
genomic: AGGCCCTTGAGAAAATTGGCACCCCAGAGGCTCTTAATCTACGTGGGAAGgtaactgttt ... aattttacagGCAGCAGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGAAATTT
EST: gi|10236155|gb|BE805043.1|BE805043
EST:     AGGCCCTTGAGAAAATTGGCACCCCAGAGGCTCTTAATCTACGTGGGAAG                         GCAGCAGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGAAATTT
genomic: AGGCCCTTGAGAAAATTGGCACCCCAGAGGCTCTTAATCTACGTGGGAAGgtaactgttt ... aattttacagGCAGCAGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGAAATTT
EST: gi|58019244|gb|CX705986.1|CX705986
EST:     CCCCAGAGGCTCTTAATCTACGTGGAAAG                         GCAGCAGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGAAATTT
genomic: CCCCAGAGGCTCTTAATCTACGTGGGAAGgtaactgttt ... aattttacagGCAGCAGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGAAATTT
EST: gi|192312884|gb|FK004040.1|FK004040
EST:     AGGCCCTTGAGAAAATTGGCACCCCAGAGGCTCTTAATCTACGTGGGAAG                         GCAGCAGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGAAATTT
genomic: AGGCCCTTGAGAAAATTGGCACCCCAGAGGCTCTTAATCTACGTGGGAAGgtaactgttt ... aattttacagGCAGCAGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGAAATTT